Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0945 ATGAAGAACTCCAAGCGGCCTCATTTCTTTGAGGTTTTCCAGCCTGACGCGAGCTCCGAGCGACTGAAAATTCCATCAAGATTCATCAAACACATGGAAGGCAGAACATCTGGATTTGTTTCATTAGTGGGCCCTAGTGATAACACTTGGCATGTTGACTTGATTCAGCAGAATAGTGACTTATTATTGCATGATGGATGGCCAGTATTTGTGAGAGATCACTGCATAGAATGTGGTGACTCTTTGGTATTTAGATATGATGGCAATTTGCATTTCACAGTGCAAGTTTTTGATCGAAGTTCATGTGAGAAAGAAGCTGCATTTCATGCTAAATGCAGCCAAGATCCAGGAGGTTTGGATGATCCGCTAAGAAAAAAAAGAGAAAGGGAGAGCCCAGTTGTCTCTAAAGATAAAATTTTTGAAGGTGTGCCAAAGAAAATGAGAGGGAGCTCTTGTCATGTGCATTCAGAATGCATAACTAAGAACTTGGAAGACAAGATGGATAAATCTGATAAGGAAGCATGCAAGTGTGAAGATTTATTTATGACCGAAAAATGTCAAGCAGCAGTTTTCTCCAATGAAACAAAGAAATGCGGGAGTCCATCAAAGGATTCCCTCAGTTCTATGCCTTCTCAATTAAAAGCTTGCAATGAAAAACCAGAGGCTGCCATCCAGAGCAGAGCAGATGATGAATTCGATTCTCGTGCTAGAGGTTGTGGTTGCACTTCTCTGTTGTCAACATTTGAAGAGAAAAAAGTAGCTCAGTCTTTTACTTCCTCTTTTCCTAATTTTGTGAGGATCATGAAAAAGTTCAACATCAGTGGTTCATATACTCTGAAAATCCCATATAAGTTCTCAATGGAACATCTTCCCAAGTGCAAAATAAAGATTGTCCTTCGTAATCTAAAAGGAGATTGTTGGACTGTGAATTCAGTCCCAACTACAAAGGTTCACACTCTTCATACCTTCTGTGGAGGGTGGATGGCTTTCGTCCGTGGTAATGGCCTCAAGATGGGAGATATTTGCATTTTTGAACTTGTGCGCAAGTGTGAAATGCGTGTTCACATTCTTGGGGCTGGAAAGGAAGGTATAGATGGCCAAAGTGGGAAAACTATGTCTAATGGGTTTACTCCAGGGTGTGCTGCCACTTCACATAAAAATCCTGAAGGTTTACCAAAGAAACCAAAAGGGAACTCTTCAAAGGTCCATTTAAAACATATAACCAAGCTGGGTGTATCTGGTAAGAAAGGGTCTAAAACACATCAAGATACTGTTCCTAATGAAATGAAAAAACATGGTAGTTCATCAAAGAGCTCTGTCAGTTCTGCATCAAAAGCTTGCAATGAAAAGCCTGAGTCAGCCATCCAGAACACAACCAGTGCAGCAGATGATCTAAGATCACAAGCTAAAAGTTTTGTCTCAACAATATCAGCTGAAGAAGAAAAAGCAGTGCGTTCTTTTACTTCTAGTTATCCTTATTTTGCGAGGTTCATGAAGAAGTTCAATATCAGTGGTTCATATACTCTAGTGAGTAGTTTTCTAATCGTATCTTTGTTTTGTTTTAACTTGTATTTGTTCATGTCAGGTTTATTTGCTGTGCCGTGGATGAATGAAACCCATTATTGCATCATCAGTGAATAA 1641 0.3961 MKNSKRPHFFEVFQPDASSERLKIPSRFIKHMEGRTSGFVSLVGPSDNTWHVDLIQQNSDLLLHDGWPVFVRDHCIECGDSLVFRYDGNLHFTVQVFDRSSCEKEAAFHAKCSQDPGGLDDPLRKKRERESPVVSKDKIFEGVPKKMRGSSCHVHSECITKNLEDKMDKSDKEACKCEDLFMTEKCQAAVFSNETKKCGSPSKDSLSSMPSQLKACNEKPEAAIQSRADDEFDSRARGCGCTSLLSTFEEKKVAQSFTSSFPNFVRIMKKFNISGSYTLKIPYKFSMEHLPKCKIKIVLRNLKGDCWTVNSVPTTKVHTLHTFCGGWMAFVRGNGLKMGDICIFELVRKCEMRVHILGAGKEGIDGQSGKTMSNGFTPGCAATSHKNPEGLPKKPKGNSSKVHLKHITKLGVSGKKGSKTHQDTVPNEMKKHGSSSKSSVSSASKACNEKPESAIQNTTSAADDLRSQAKSFVSTISAEEEKAVRSFTSSYPYFARFMKKFNISGSYTLVSSFLIVSLFCFNLYLFMSGLFAVPWMNETHYCIISE* 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0945 546 MobiDBLite consensus disorder prediction 118 132 - -
Vvi18g0945 546 MobiDBLite consensus disorder prediction 431 462 - -
Vvi18g0945 546 ProSiteProfiles B3 DNA-binding domain profile. 264 360 IPR003340 GO:0003677
Vvi18g0945 546 MobiDBLite consensus disorder prediction 113 132 - -
Vvi18g0945 546 ProSiteProfiles B3 DNA-binding domain profile. 7 100 IPR003340 GO:0003677
Vvi18g0945 546 CDD B3_DNA 262 357 IPR003340 GO:0003677
Vvi18g0945 546 Gene3D - 247 359 IPR015300 -
Vvi18g0945 546 MobiDBLite consensus disorder prediction 375 462 - -
Vvi18g0945 546 SUPERFAMILY DNA-binding pseudobarrel domain 257 359 IPR015300 -
Vvi18g0945 546 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 22 362 IPR044837 -
Vvi18g0945 546 Pfam B3 DNA binding domain 267 357 IPR003340 GO:0003677
Vvi18g0945 546 Pfam B3 DNA binding domain 10 99 IPR003340 GO:0003677
Vvi18g0945 546 SUPERFAMILY DNA-binding pseudobarrel domain 3 102 IPR015300 -
Vvi18g0945 546 Gene3D - 1 102 IPR015300 -
Vvi18g0945 546 SMART B3_2 9 100 IPR003340 GO:0003677
Vvi18g0945 546 SMART B3_2 264 360 IPR003340 GO:0003677
Vvi18g0945 546 CDD B3_DNA 7 98 IPR003340 GO:0003677
Vvi18g0945 546 MobiDBLite consensus disorder prediction 398 412 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0945 Vvi-Chr18 9669874 9675412 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0945 6 348 B3 DNA Binding Superfamily AT3G18990 23.243 3.70e-16 78.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vvi18g0945 B3 9.3e-12 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0945 - - vvi:100253936 1020.38