Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0944 ATGCCTTCGTCTCCCATGGTTGCAGAGCGCCCCTGTCCCAGGCATTTCTTTAAGGTTATGATCAATGATTTCCGTACTCAACTGTCAATACCACCAGGGTTTTCTAGGAAGTTAAATGGCGAGAAAATGGAGAAAGCGGTGCTTACAAGTTACAAGGGGTCATGGGTTATCGAAGTTGGTAAATGTGGCCAACTTTTTCATTTCAAAGAGGGATGGGAAGAGTTTGTGCGGAACCACAATCTCAATGTTGGAGATTTTGTTGTGTTTGAACACAAGGGAAGTATGAGGTTTGATGTGTTGGTGTTTGATTCAAGTGCTTGTGAGAAAAGACTTTCTAACAGGTTGGGCAATAAGAGGGGGAGAACAGCCAAGCAAGCTGACAGCTGCGATCATCATGTGGAGCTCGTCAAACTAGAATCTGATTCAAGGGTTCGCGAGAGGGAACTTTCTCCACCCATGGCGCAGGGAAACAACAACTCCCATGACCATGTCAAGCAGCTCAAAGGTGAGTTCTAA 516 0.4554 MPSSPMVAERPCPRHFFKVMINDFRTQLSIPPGFSRKLNGEKMEKAVLTSYKGSWVIEVGKCGQLFHFKEGWEEFVRNHNLNVGDFVVFEHKGSMRFDVLVFDSSACEKRLSNRLGNKRGRTAKQADSCDHHVELVKLESDSRVRERELSPPMAQGNNNSHDHVKQLKGEF* 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0944 171 ProSiteProfiles B3 DNA-binding domain profile. 13 105 IPR003340 GO:0003677
Vvi18g0944 171 MobiDBLite consensus disorder prediction 140 171 - -
Vvi18g0944 171 Gene3D - 10 107 IPR015300 -
Vvi18g0944 171 SUPERFAMILY DNA-binding pseudobarrel domain 11 107 IPR015300 -
Vvi18g0944 171 CDD B3_DNA 14 103 IPR003340 GO:0003677
Vvi18g0944 171 PANTHER B3 DOMAIN-CONTAINING 13 129 - -
Vvi18g0944 171 Pfam B3 DNA binding domain 16 103 IPR003340 GO:0003677
Vvi18g0944 171 SMART B3_2 16 105 IPR003340 GO:0003677
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0944 11 108 REM Transcription Factor Family AT4G31650 36.275 2.24e-14 68.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vvi18g0944 B3 1.3e-13 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0944 - - vvi:104882540 350.903