Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0937 ATGGCGATTAAACTCACCGTCACCTATTCCGGCTATGTCGCTCAAAACCTAGCGTCATCGGCCGGAATTAGGGTTGGCAATTGTCGTTCTATTCATGAATGCTGGGTCCGATCTCGGTTCTTCTGCCCCAGTCAGAAGCCTGAGGTCGATTCTCCTGTTCCGTCAAGGGCTTACCAGGCTGATTATCGGAGGCCTAAGGCGAATTGTTGGGCCAAGGTATCGACGTCGGCCTATAGCACTCTCGCTGGGGAAGTTTTTGGTGATAGTTGTAGAAACCCTCTAATCGTGGGTTTGATTTCGCTGATGAAGTCTTCGACTGGCGTTTCTGAATCTAGTGTGGGGGTTTTTGGGGTTTCGCCCTTAAAAGCCACTTCGATCCTTCCGTTTTTGCCAGGATCGAAGTGGCTTCCCTGTAATGAGCCGATTCAGGGTTCTGTTGGTGATGAAGTGGATAAGGGCGGAACACAATGTTGCGATGTCGAAGTTATTTCGAAGCCCCTTGATCGGAAGGTGCTGGAAAGGAGCAATTGGCTCTCCAAATTACTGAATTGCTGTTCAGAGGATGCCAGGGCTGTTTTTACGGCGGTGACTGTTAGTTTACTTTTTCGGTCGCCCTTGGCTGAACCAAGATCAATTCCGTCCGCGTCCATGTATCCCACTCTGGATGTGGGTGACCGCATATTAGCGGAGAAGGTTTCATACGTCTTCAGAAATCCTGAAGTCTCAGATATAGTGATATTTAAGGTGCCTCCAATACTCCAGGAAATTGGTTATAGCGCTGGAGATGTATTCATAAAAAGAATTGTTGCAAAAGCTGGGGACTATGTTGAAGTTTCTGAAGGGAAATTGATGGTAAATGGTGTTGCACAAGAGGAAGATTTCATTTTGGAGCCTCTTGCTTATAATATGGATCCAGTGCTTGTGCCTGAAGGATATGTCTTTGTGTTGGGAGACAATCGTAATAACAGTTTTGACTCCCATAATTGGGGTCCTCTTCCAATAAAAAACATTGTTGGTAGATCAGTTCTTCGGTATTGGCCCCCCTCCAAAGTATCGGACACTATTTATGAACCAGAAGCTCGGAAGACTGCTATGGCAATTTCTTGA 1107 0.4643 MAIKLTVTYSGYVAQNLASSAGIRVGNCRSIHECWVRSRFFCPSQKPEVDSPVPSRAYQADYRRPKANCWAKVSTSAYSTLAGEVFGDSCRNPLIVGLISLMKSSTGVSESSVGVFGVSPLKATSILPFLPGSKWLPCNEPIQGSVGDEVDKGGTQCCDVEVISKPLDRKVLERSNWLSKLLNCCSEDARAVFTAVTVSLLFRSPLAEPRSIPSASMYPTLDVGDRILAEKVSYVFRNPEVSDIVIFKVPPILQEIGYSAGDVFIKRIVAKAGDYVEVSEGKLMVNGVAQEEDFILEPLAYNMDPVLVPEGYVFVLGDNRNNSFDSHNWGPLPIKNIVGRSVLRYWPPSKVSDTIYEPEARKTAMAIS* 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0937 368 CDD S26_SPase_I 208 340 IPR019533 GO:0004252|GO:0006465
Vvi18g0937 368 Gene3D Umud Fragment, subunit A 202 362 - -
Vvi18g0937 368 NCBIfam signal peptidase I 192 347 IPR000223 GO:0006508|GO:0008236|GO:0016020
Vvi18g0937 368 SUPERFAMILY LexA/Signal peptidase 203 352 IPR036286 -
Vvi18g0937 368 ProSitePatterns Signal peptidases I signature 3. 313 326 IPR019758 GO:0004252|GO:0016020
Vvi18g0937 368 PANTHER SIGNAL PEPTIDASE I 175 353 IPR000223 GO:0006508|GO:0008236|GO:0016020
Vvi18g0937 368 Pfam Signal peptidase, peptidase S26 189 346 IPR019533 GO:0004252|GO:0006465
Vvi18g0937 368 ProSitePatterns Signal peptidases I serine active site. 214 221 IPR019756 GO:0004252|GO:0016020
Vvi18g0937 368 FunFam Peptidase/ serine-type peptidase 214 345 - -
Vvi18g0937 368 PRINTS Bacterial leader peptidase 1 (S26A) family signature 308 327 IPR000223 GO:0006508|GO:0008236|GO:0016020
Vvi18g0937 368 PRINTS Bacterial leader peptidase 1 (S26A) family signature 205 221 IPR000223 GO:0006508|GO:0008236|GO:0016020
Vvi18g0937 368 PRINTS Bacterial leader peptidase 1 (S26A) family signature 264 276 IPR000223 GO:0006508|GO:0008236|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0937 Vvi-Chr18 9603491 9606102 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0937 217 347 MADS-box Gene Family AT1G29960 31.061 1.51e-11 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0937 K03100 - vvi:100243802 731.865