Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0932 ATGGATTCCTCGCAGAACGCCTTCTGGCCACATTCTTCGTCGTCGTCTCCTCCCGATTCTCCGCCACAGCGGCGGGAAATCGGTGGTTTCCGTTTCGGTAGTCTTGGTCGAGGACTGTACCCTAAACGGGCCGGCCAACTCACGCGGCAGCGGAAGCTACGGCATCTGGATGACAGTGAGCTCGGTGGTTTGGATTTGAGGGAGCGTTCTTATTCGTTGCCTGTTTCACCGAAGTCGACGTCGGGTTTGCGGTGGCCGAAAGGCTCGGAGCGCTGGTCGTGCCCCCCAGTGCCGCAGCCGCAGCCGCTGCCACAGCCTTTGCCGCTGCCGGAATTGCCTTCGCATATCGGTCGGAGACCTGGTCCGCCGGATTCAAATTTGGGGCAACGTGGTGTTAGGTCACCGGTCACAGCAGATGGAAATGGAACTGGTGATAGAACCTTGTATGGCTCAAGGTTTTGGAGTGTTTATGCTCGTGGATCTACCTGGAAGAACACAGATCATCTTGCCACAAAATCAGCTAATTCGCCAAGGGGATTCTCTCAAGATCTAAATGATGAAGCTTGTCCTTACAACTTACGGGTGAATATTCCTGCTAGGAGTGCTCCAACAAGTGGTTTCTCAAGTCCTGCTCTTAGCCCACAAAGATTTAGCCCTGGGGAACGTTTACCATCCTCCTATGCAGCTATTCAAGACTTTCAGTCACCCGGCTTTGATAGGCTTCCAGGTTGTTCTTCACAGATGTCACCATTGAAAACTCCGCACACTCCCGATTATTCTCCGCTTCATAGCCCAACAGTTCAAAGTCCCTGCATTAGCCCCTGTCTTAGCCCCAAAAGTCCAACTGGTATTGCATTTTCTTTGTATCCTAAATTGCTCCCAGGGAGTCATGTAACATGGCCTGAAAAGAATGGTCATGTCACTGTCCATCCATTGCCCCTTCCTCCTATAGCTTTAATGCCATCAGAATTACCCTTGCCTCCAAAAGCTTTAACACCATCAGAGTCAGCTATCAGTCATCACACTGCAGAGAAACCAAATGTACCATCAATGAAAAGTCAATGGCAGAAAGGGAAACTTATTGGACGGGGCACATTTGGAAGTGTGTATGTTGCAACAAATCGAGAAACTGGAGCTTTATGTGCAATGAAGGAAGTTGATATCATTCCAGATGACCCTAAATCTAGTGAGTGTATCAAACAGTTGGAGCAGGAAATTAAAGTTCTCCATCATTTAAAGCATCCAAATATTGTGCAGTACTATGGCAGTGAAATTGTTGATGATCATTTTTACATATATTTGGAATATGTTCATCCTGGATCCATAAATAAATATGTTGATCATTTTGGAGCTATGACAGAAAATGTAGTTCGAAATTTCACCCGCCATATTCTCTCTGGGTTGGCTTACTTGCACAGCACAAAGACAATCCACAGGGATATCAAAGGGGCAAATTTACTCGTTGACTCATTTGGTGTTGTTAAGCTTGCAGACTTTGGGTTGGCAAAATTTCTTACAGGACAAGCATGTGATCTTTCACTGAAGGGCAGTCCACACTGGATGGCTCCAGAGGTCATGCAAGCTGTGCTGCGGAAAGATGCCAATCCTGATCTTGCTTTTGCGGTGGACATATGGAGCTTGGGTTGTACCATCATTGAGATGCTGAATGGAAGACCTCCTTGGAGTGAGTTTGCTGCGGTAAGCTTTTGA 1710 0.4737 MDSSQNAFWPHSSSSSPPDSPPQRREIGGFRFGSLGRGLYPKRAGQLTRQRKLRHLDDSELGGLDLRERSYSLPVSPKSTSGLRWPKGSERWSCPPVPQPQPLPQPLPLPELPSHIGRRPGPPDSNLGQRGVRSPVTADGNGTGDRTLYGSRFWSVYARGSTWKNTDHLATKSANSPRGFSQDLNDEACPYNLRVNIPARSAPTSGFSSPALSPQRFSPGERLPSSYAAIQDFQSPGFDRLPGCSSQMSPLKTPHTPDYSPLHSPTVQSPCISPCLSPKSPTGIAFSLYPKLLPGSHVTWPEKNGHVTVHPLPLPPIALMPSELPLPPKALTPSESAISHHTAEKPNVPSMKSQWQKGKLIGRGTFGSVYVATNRETGALCAMKEVDIIPDDPKSSECIKQLEQEIKVLHHLKHPNIVQYYGSEIVDDHFYIYLEYVHPGSINKYVDHFGAMTENVVRNFTRHILSGLAYLHSTKTIHRDIKGANLLVDSFGVVKLADFGLAKFLTGQACDLSLKGSPHWMAPEVMQAVLRKDANPDLAFAVDIWSLGCTIIEMLNGRPPWSEFAAVSF* 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0932 569 Pfam Protein kinase domain 356 562 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g0932 569 SMART serkin_6 355 569 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g0932 569 MobiDBLite consensus disorder prediction 335 354 - -
Vvi18g0932 569 MobiDBLite consensus disorder prediction 1 21 - -
Vvi18g0932 569 MobiDBLite consensus disorder prediction 332 354 - -
Vvi18g0932 569 SUPERFAMILY Protein kinase-like (PK-like) 341 563 IPR011009 -
Vvi18g0932 569 Gene3D Transferase(Phosphotransferase) domain 1 351 568 - -
Vvi18g0932 569 ProSiteProfiles Protein kinase domain profile. 355 569 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g0932 569 MobiDBLite consensus disorder prediction 93 117 - -
Vvi18g0932 569 MobiDBLite consensus disorder prediction 50 65 - -
Vvi18g0932 569 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 169 567 - -
Vvi18g0932 569 MobiDBLite consensus disorder prediction 1 145 - -
Vvi18g0932 569 ProSitePatterns Protein kinases ATP-binding region signature. 361 384 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0932 Vvi-Chr18 9548686 9555639 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0932 37 569 MAP Kinase Kinase Kinase AT5G66850 47.772 2.07e-138 416
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Vvi18g0932 Pkinase 1.4e-57 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0932 - K04420 vvi:100257467 1141.33