Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0924 ATGGAAGCAACCAACAGGTGTTCTTCTTATACCTCTTCTTCCGATTCTTCTTCTTCTGAGTCTTCTTTATCTGGAAAGCAACCCAACAAATCTGAGAGAATAAAGGGTTCGTGGAGTGCGGAGGAGGACAGAGTCCTCACTCGTCTTGTTGAGCGCTACGGTGCTCGAAACTGGTCCTTGATAAGCCGATACATAAAGGGTCGGTCGGGGAAGTCCTGCCGGCTCAGGTGGTGCAACCAGCTCAGCCCCAGTGTAGAGCATCGGCCCTTCTCTGCGGCCGAGGACGACACCATCCTCGCCGCTCATGCAAGGTACGGCAACAGATGGGCCACCATTGCCCGCCTGCTTCCGGGTCGGACGGATAATGCGGTGAAGAACCATTGGAACTCCACGTTGAAGAAGAGGCAGAGAGAGCAGAGTCAGCAGATGGAGGGGCCATCGGGATCTGGGTCCTACCCGGACATGGAGCCCGACCCGATTACCACCTTGTCATTGGCGCCGCCGGGTGCCCACGGTTCCACGCCAGAGGAGCGGCGGGCGGAGAGTTTTCCGGAGGGGTTTTGGGATGCGATGAGAGGTGTTATAGCAAGGGAGTATTCAACCACAACCGTTGAAGTTGAAGGCTTGAAGCAGCTTTCCGACACCTTCCTCACACTTTCTGTGGAATCAATGCTCAGGTTTCAATCCTAA 690 0.5522 MEATNRCSSYTSSSDSSSSESSLSGKQPNKSERIKGSWSAEEDRVLTRLVERYGARNWSLISRYIKGRSGKSCRLRWCNQLSPSVEHRPFSAAEDDTILAAHARYGNRWATIARLLPGRTDNAVKNHWNSTLKKRQREQSQQMEGPSGSGSYPDMEPDPITTLSLAPPGAHGSTPEERRAESFPEGFWDAMRGVIAREYSTTTVEVEGLKQLSDTFLTLSVESMLRFQS* 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0924 229 MobiDBLite consensus disorder prediction 1 37 - -
Vvi18g0924 229 PANTHER MYB PROTEIN-RELATED 35 142 - -
Vvi18g0924 229 ProSiteProfiles Myb-like domain profile. 82 132 IPR001005 -
Vvi18g0924 229 FunFam MYB transcription factor 35 86 - -
Vvi18g0924 229 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 30 85 IPR017930 -
Vvi18g0924 229 MobiDBLite consensus disorder prediction 1 34 - -
Vvi18g0924 229 SUPERFAMILY Homeodomain-like 33 128 IPR009057 -
Vvi18g0924 229 SMART sant 86 134 IPR001005 -
Vvi18g0924 229 SMART sant 34 83 IPR001005 -
Vvi18g0924 229 Gene3D - 89 147 - -
Vvi18g0924 229 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 87 136 IPR017930 -
Vvi18g0924 229 ProSiteProfiles Myb-like domain profile. 30 81 IPR001005 -
Vvi18g0924 229 CDD SANT 37 79 IPR001005 -
Vvi18g0924 229 Gene3D - 34 86 - -
Vvi18g0924 229 CDD SANT 89 132 IPR001005 -
Vvi18g0924 229 MobiDBLite consensus disorder prediction 131 184 - -
Vvi18g0924 229 Pfam Myb-like DNA-binding domain 38 96 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0924 Vvi-Chr18 9482158 9482964 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0924 23 135 MYB Transcription Factor Family AT2G23290 70.796 1.62e-55 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vvi18g0924 Myb_DNA-bind_6 2.1e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0924 - - vvi:100250670 390.963