Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vvi18g0918 | ATGGAGGAATTGGGACCTTTCCGAGTCAACCCGGATGGAAAAACGCTTTTCCGGAATGAGTATGCATGGAACAACGTGTCAAATGTGATATTCTTGGAGTCCCCAGCCGGAGTGGGGTTTTCATATTCGAACACATCATCTGACTACGTCAATGTGGGTGACAAGAAGACGGCGGAGGACTCCTATACTTTTCTCATCAACTGGCTCGAGAGGTTCCCGCAGTATAAAACCCGGGATTTCTTCATAACCGGGGAGAGTTACTCCGGTCATTATGTACCTCAGCTTGCCTACACAATTCTCTCAAACAACAACAAAACTAATCAAACAGTCATCAACCTCAAAGGCATTGCGATTGGGAATGCTTGGATAGATGATAATACCAGCCTTAAGGGGATTTATGATTATATCTGGACGCATGCTTTGAGCTCGGACGAAAGTAACGCTGGCATTCAGAAATACTGTGACTTCACTACTGGAAATTTTTCAACCAAATGCCTAGACTACACATATCAAGCAGAAGGAGAGGTCGGAAATATTGATATTTACAACATATACGCTCCACTCTGTCATTCATCAGGACCGACTTCCCGCTCCGTGGGTTCTGTCAATGATTTTGATCCCTGCTCCGATTATTATGTGGAGTCCTATCTGAATCTGGCTGAAGTCCAAAAGGCTCTTCATGCAAGAAACACCACATGGGGAGCTTGCAGCGGAGTGGGATGGACAGACAGCCCAACGACCATTTTACCCACAATCAAGCAGCTGATGGCGAGTGGAATCAGCGTATGGATATACAGCGGCGACACTGATGGGCGTGTTCCAGTTACATCCTCTAGGTACTCTATAAACACCTTCAAACTTCCTGTCAAAACAGCCTGGCGGCCATGGTACTACAACAAGGAGGTTGGAGGATATGTTGTTGAGTACAAAGGGGTGGTTTTTGCTACAGTCAGGGGAGCTGGGCATCTAGTTCCAAGCTACCAACCTGGACGAGCTCTGACCATGATTGCTTCTTTCCTCCAGGGAACGCTTCCTCCTCCCTCTTGA | 1047 | 0.469 | MEELGPFRVNPDGKTLFRNEYAWNNVSNVIFLESPAGVGFSYSNTSSDYVNVGDKKTAEDSYTFLINWLERFPQYKTRDFFITGESYSGHYVPQLAYTILSNNNKTNQTVINLKGIAIGNAWIDDNTSLKGIYDYIWTHALSSDESNAGIQKYCDFTTGNFSTKCLDYTYQAEGEVGNIDIYNIYAPLCHSSGPTSRSVGSVNDFDPCSDYYVESYLNLAEVQKALHARNTTWGACSGVGWTDSPTTILPTIKQLMASGISVWIYSGDTDGRVPVTSSRYSINTFKLPVKTAWRPWYYNKEVGGYVVEYKGVVFATVRGAGHLVPSYQPGRALTMIASFLQGTLPPPS* | 349 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vvi18g0918 | 348 | ProSitePatterns | Serine carboxypeptidases, histidine active site. | 312 | 329 | IPR033124 | GO:0004185 | |
| Vvi18g0918 | 348 | Pfam | Serine carboxypeptidase | 2 | 342 | IPR001563 | GO:0004185|GO:0006508 | |
| Vvi18g0918 | 348 | PRINTS | Carboxypeptidase C serine protease (S10) family signature | 68 | 93 | IPR001563 | GO:0004185|GO:0006508 | |
| Vvi18g0918 | 348 | PRINTS | Carboxypeptidase C serine protease (S10) family signature | 312 | 325 | IPR001563 | GO:0004185|GO:0006508 | |
| Vvi18g0918 | 348 | PRINTS | Carboxypeptidase C serine protease (S10) family signature | 19 | 31 | IPR001563 | GO:0004185|GO:0006508 | |
| Vvi18g0918 | 348 | PRINTS | Carboxypeptidase C serine protease (S10) family signature | 32 | 42 | IPR001563 | GO:0004185|GO:0006508 | |
| Vvi18g0918 | 348 | FunFam | Carboxypeptidase | 29 | 191 | - | - | |
| Vvi18g0918 | 348 | FunFam | Carboxypeptidase | 248 | 342 | - | - | |
| Vvi18g0918 | 348 | SUPERFAMILY | alpha/beta-Hydrolases | 1 | 343 | IPR029058 | - | |
| Vvi18g0918 | 348 | Gene3D | - | 248 | 342 | - | - | |
| Vvi18g0918 | 348 | PANTHER | SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE | 1 | 329 | IPR001563 | GO:0004185|GO:0006508 | |
| Vvi18g0918 | 348 | Gene3D | alpha/beta hydrolase | 1 | 199 | IPR029058 | - | |
| Vvi18g0918 | 348 | Gene3D | - | 208 | 239 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vvi18g0918 | Vvi-Chr18 | 9420352 | 9422047 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vvi18g0918 | 216 | 342 | Calmodulin-binding Proteins | AT2G22960 | 28.788 | 7.04e-13 | 64.7 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vvi18g0918 | K16297 | - | vvi:100255855 | 719.539 |