Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0918 ATGGAGGAATTGGGACCTTTCCGAGTCAACCCGGATGGAAAAACGCTTTTCCGGAATGAGTATGCATGGAACAACGTGTCAAATGTGATATTCTTGGAGTCCCCAGCCGGAGTGGGGTTTTCATATTCGAACACATCATCTGACTACGTCAATGTGGGTGACAAGAAGACGGCGGAGGACTCCTATACTTTTCTCATCAACTGGCTCGAGAGGTTCCCGCAGTATAAAACCCGGGATTTCTTCATAACCGGGGAGAGTTACTCCGGTCATTATGTACCTCAGCTTGCCTACACAATTCTCTCAAACAACAACAAAACTAATCAAACAGTCATCAACCTCAAAGGCATTGCGATTGGGAATGCTTGGATAGATGATAATACCAGCCTTAAGGGGATTTATGATTATATCTGGACGCATGCTTTGAGCTCGGACGAAAGTAACGCTGGCATTCAGAAATACTGTGACTTCACTACTGGAAATTTTTCAACCAAATGCCTAGACTACACATATCAAGCAGAAGGAGAGGTCGGAAATATTGATATTTACAACATATACGCTCCACTCTGTCATTCATCAGGACCGACTTCCCGCTCCGTGGGTTCTGTCAATGATTTTGATCCCTGCTCCGATTATTATGTGGAGTCCTATCTGAATCTGGCTGAAGTCCAAAAGGCTCTTCATGCAAGAAACACCACATGGGGAGCTTGCAGCGGAGTGGGATGGACAGACAGCCCAACGACCATTTTACCCACAATCAAGCAGCTGATGGCGAGTGGAATCAGCGTATGGATATACAGCGGCGACACTGATGGGCGTGTTCCAGTTACATCCTCTAGGTACTCTATAAACACCTTCAAACTTCCTGTCAAAACAGCCTGGCGGCCATGGTACTACAACAAGGAGGTTGGAGGATATGTTGTTGAGTACAAAGGGGTGGTTTTTGCTACAGTCAGGGGAGCTGGGCATCTAGTTCCAAGCTACCAACCTGGACGAGCTCTGACCATGATTGCTTCTTTCCTCCAGGGAACGCTTCCTCCTCCCTCTTGA 1047 0.469 MEELGPFRVNPDGKTLFRNEYAWNNVSNVIFLESPAGVGFSYSNTSSDYVNVGDKKTAEDSYTFLINWLERFPQYKTRDFFITGESYSGHYVPQLAYTILSNNNKTNQTVINLKGIAIGNAWIDDNTSLKGIYDYIWTHALSSDESNAGIQKYCDFTTGNFSTKCLDYTYQAEGEVGNIDIYNIYAPLCHSSGPTSRSVGSVNDFDPCSDYYVESYLNLAEVQKALHARNTTWGACSGVGWTDSPTTILPTIKQLMASGISVWIYSGDTDGRVPVTSSRYSINTFKLPVKTAWRPWYYNKEVGGYVVEYKGVVFATVRGAGHLVPSYQPGRALTMIASFLQGTLPPPS* 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0918 348 ProSitePatterns Serine carboxypeptidases, histidine active site. 312 329 IPR033124 GO:0004185
Vvi18g0918 348 Pfam Serine carboxypeptidase 2 342 IPR001563 GO:0004185|GO:0006508
Vvi18g0918 348 PRINTS Carboxypeptidase C serine protease (S10) family signature 68 93 IPR001563 GO:0004185|GO:0006508
Vvi18g0918 348 PRINTS Carboxypeptidase C serine protease (S10) family signature 312 325 IPR001563 GO:0004185|GO:0006508
Vvi18g0918 348 PRINTS Carboxypeptidase C serine protease (S10) family signature 19 31 IPR001563 GO:0004185|GO:0006508
Vvi18g0918 348 PRINTS Carboxypeptidase C serine protease (S10) family signature 32 42 IPR001563 GO:0004185|GO:0006508
Vvi18g0918 348 FunFam Carboxypeptidase 29 191 - -
Vvi18g0918 348 FunFam Carboxypeptidase 248 342 - -
Vvi18g0918 348 SUPERFAMILY alpha/beta-Hydrolases 1 343 IPR029058 -
Vvi18g0918 348 Gene3D - 248 342 - -
Vvi18g0918 348 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 1 329 IPR001563 GO:0004185|GO:0006508
Vvi18g0918 348 Gene3D alpha/beta hydrolase 1 199 IPR029058 -
Vvi18g0918 348 Gene3D - 208 239 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0918 Vvi-Chr18 9420352 9422047 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0918 216 342 Calmodulin-binding Proteins AT2G22960 28.788 7.04e-13 64.7