Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0916 ATGCAATCCACCAACGGTTCTGATCCGCAACAGGCGAATCAGCAGCAGCAACAGCCGCCGCCGCCTCCTCCGCAGCCGCAGCAGTGGATGGCCATGCAGTATCCGGCGGCGGCGATGGTAATGCAGCATCAGATGATGCCGCCGCAGCATTATCCGCAGCACTTCGTGGCTTATCACCACCAGCCTCATCAGTATCAGCATCAGCATCAGCAGCAGCATCAGCAACAGCAGGGATCCAACGCCGACAACAGGACGATCTGGGTCGGCGACCTCCATAACTGGATGGACGAGAATTACCTCCATAGCTGCTTTGCTGCCACTGGCGAGCTTGCTTCCATGAAGGTTATTCGCAATAAGCAGACTGGTTCATCAGAGGGTTATGGATTTGTGGAATTTTTTTCACATGCTGCGGCTGAGAAGGTTCTACAGGGTTATGCTGGTGTGTTGATGCCTAATACAGATCAGCCCTTTCGGCTGAACTGGGCAACATTTAGTATGGGTGATAAGCGGTCAGATAATGGTCCTGATCTTTCCATATTTGTAGGAGATTTAGCTTCAGATGTTTCTGATAGCTTATTACATGAAACTTTTGCTGGTAAATATCCATCTGTTAAGGCTGCAAAAGTTGTCTTTGATGCCAATACTGGTCGTTCAAAAGGTTATGGCTTTGTGAGGTTTGGAGATGAGAATGAGAGGTCACAGGCCATGACTGAAATGAATGGTGTATATTGTTCGAGTAGGCCCATGCGCATTGGTGCAGCAACTCCAAGGAAGTCATCTGGATATCAACAACAATATTCTTCACATGGTGGATATGCATCAAATGGTGCCTCAGTCCAATCTGATGGAGACTCTATGAACACAACAATATTTGTCGGAGGGCTTGATCCTAATGTCTCTGATGAAGATCTCAGGCAGCCTTTCTCCCAATATGGTGAGATTGTCTCTGTAAAAATACCAGTTGGTAAAGGATGTGGGTTTGTACAATTTGCAAACAGAAACAATGCTGAGGATGCGCTACAGAAATTGAATGGAACAGTAATTGGCAAGCAAACAGTCCGTCTTTCTTGGGGTCGGAATCCAGCAAATAAACAGATGAGGGCAGATTTTGGCAATCAGTGGAGTGGGGCGTACTATGGAGGGCAGGTGTATGATGGTTATGGATATGCTCTGCCACCACCTCATGACCCAACCATGTATGCTGCGGCATATGGGGCTTACCCCGTGTATGGCAACCACCAACAGCAAGTTAGCTGA 1257 0.4781 MQSTNGSDPQQANQQQQQPPPPPPQPQQWMAMQYPAAAMVMQHQMMPPQHYPQHFVAYHHQPHQYQHQHQQQHQQQQGSNADNRTIWVGDLHNWMDENYLHSCFAATGELASMKVIRNKQTGSSEGYGFVEFFSHAAAEKVLQGYAGVLMPNTDQPFRLNWATFSMGDKRSDNGPDLSIFVGDLASDVSDSLLHETFAGKYPSVKAAKVVFDANTGRSKGYGFVRFGDENERSQAMTEMNGVYCSSRPMRIGAATPRKSSGYQQQYSSHGGYASNGASVQSDGDSMNTTIFVGGLDPNVSDEDLRQPFSQYGEIVSVKIPVGKGCGFVQFANRNNAEDALQKLNGTVIGKQTVRLSWGRNPANKQMRADFGNQWSGAYYGGQVYDGYGYALPPPHDPTMYAAAYGAYPVYGNHQQQVS* 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0916 418 Gene3D - 273 390 IPR012677 -
Vvi18g0916 418 FunFam Polyadenylate-binding protein RBP47 273 390 - -
Vvi18g0916 418 FunFam polyadenylate-binding protein RBP47 isoform X2 38 169 - -
Vvi18g0916 418 FunFam Polyadenylate-binding protein RBP47B 170 267 - -
Vvi18g0916 418 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 288 360 IPR000504 GO:0003723
Vvi18g0916 418 CDD RRM2_SECp43_like 176 255 - -
Vvi18g0916 418 SUPERFAMILY RNA-binding domain, RBD 45 165 IPR035979 GO:0003676
Vvi18g0916 418 CDD RRM1_SECp43_like 85 165 - -
Vvi18g0916 418 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 70 364 - -
Vvi18g0916 418 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 84 164 IPR000504 GO:0003723
Vvi18g0916 418 SUPERFAMILY RNA-binding domain, RBD 161 279 IPR035979 GO:0003676
Vvi18g0916 418 CDD RRM3_NGR1_NAM8_like 287 358 - -
Vvi18g0916 418 SUPERFAMILY RNA-binding domain, RBD 280 388 IPR035979 GO:0003676
Vvi18g0916 418 Gene3D - 40 169 IPR012677 -
Vvi18g0916 418 Gene3D - 170 272 IPR012677 -
Vvi18g0916 418 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 86 148 IPR000504 GO:0003723
Vvi18g0916 418 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 290 353 IPR000504 GO:0003723
Vvi18g0916 418 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 179 248 IPR000504 GO:0003723
Vvi18g0916 418 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 177 256 IPR000504 GO:0003723
Vvi18g0916 418 SMART rrm1_1 178 252 IPR000504 GO:0003723
Vvi18g0916 418 SMART rrm1_1 289 356 IPR000504 GO:0003723
Vvi18g0916 418 SMART rrm1_1 85 160 IPR000504 GO:0003723
Vvi18g0916 418 MobiDBLite consensus disorder prediction 1 28 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0916 Vvi-Chr18 9401113 9407092 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0916 287 374 Eukaryotic Initiation Factors Gene Family AT4G34110 32.632 1.37e-06 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0916 - - vvi:100257353 746.503