Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0893 ATGAGGACTAAAAGAGATCTGCAAAGTTTCGGGCAAGAAATCAAGGGAACCAAAGGAGCTGAAGGAAGAGAAGCAGATGAAGGTTGTGTTGTGGACTTCCAGTACACTGGTGCTCATGCGATTGCTGGAAGGCACACACCAGGTACACTCACCAATCAGCTCCAGACATCTTTCAGTGAGCCCTATCTTCTCATCCTCACCGACCCAATAACTGATCATCAGCCTATTAAGGAAGTTGCACTAGGAAACATTCCAACTATTGCTTTCTGTGACATTGATTCTCCAATGCGATACGTTGACATTGATATCCTGACCAATAACAAGGGAAAGCACAACATTGGCTGTCTATTCTGGTTGTTGACAATGATGGTTTTGCATATGCGTCACACTATTGCTCTAGGACACAAGTGGGATGTGATGGTGGATCTGTTTTTCTCGGCGGCGGTGATTGGGGTACCCCCAATTACTGATGCCCAGTGGGGCGCTGATGTGCCTGTAGTGGCTCCCATTCCTGCATCTCTAGGAAGCAGTCGAGATGCAACTCAAATGGCAAGTGCAATTCCAATCGCAACAGATTGA 579 0.468 MRTKRDLQSFGQEIKGTKGAEGREADEGCVVDFQYTGAHAIAGRHTPGTLTNQLQTSFSEPYLLILTDPITDHQPIKEVALGNIPTIAFCDIDSPMRYVDIDILTNNKGKHNIGCLFWLLTMMVLHMRHTIALGHKWDVMVDLFFSAAVIGVPPITDAQWGADVPVVAPIPASLGSSRDATQMASAIPIATD* 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0893 192 PANTHER 40S RIBOSOMAL PROTEIN SA 32 146 IPR005707 GO:0003735|GO:0006412|GO:0015935
Vvi18g0893 192 MobiDBLite consensus disorder prediction 1 21 - -
Vvi18g0893 192 SUPERFAMILY Ribosomal protein S2 34 142 IPR023591 -
Vvi18g0893 192 ProSitePatterns Ribosomal protein S2 signature 2. 61 85 IPR018130 GO:0003735|GO:0005840|GO:0006412
Vvi18g0893 192 PRINTS Ribosomal protein S2 signature 61 78 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vvi18g0893 192 PRINTS Ribosomal protein S2 signature 36 53 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vvi18g0893 192 PRINTS Ribosomal protein S2 signature 78 89 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vvi18g0893 192 PRINTS Ribosomal protein S2 signature 99 113 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vvi18g0893 192 Pfam Ribosomal protein S2 59 120 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vvi18g0893 192 Gene3D - 21 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0893 Vvi-Chr18 9095674 9097357 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0893 23 145 Cytoplasmic Ribosomal Protein Gene Family AT1G72370 77.419 6.59e-65 200
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0893 K02998 - vvi:100853839 378.637