Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0882 ATGGTGGCGGCGAAGCTAACATACGAGGAATGCCGTCGCAAGCGATTAGAGGAGAACAATAAAAGGCTTCAAGCCCTCAACCTTCCCCTCCTTTCTCAAGCTCTCCGAGAATCTCTCACCCCGAAGTCTTCCCCGGCGAAGAACTCTAAACCACGCAGAGTTCGCGAGCAACAGGTCCCACTGAGAAGGTCCAGTCGCGTTGCAAACAAGGCTTACCAGGCTCAAAAGGAAGGAAGGGATTTGTCCAACCGAGTATATGCTTCGGAGGAAGCTAGAACATGCGCCATGGAGAGAGCTGAAGAATTGCAGGCTAGTCTAGAACCCCAGTATCCTAGCTTCTTGAAGTCAATGCTCCAATCACATGTCACTGGTGGATTCTGGCTGGGCCTTCCTGTGCACTTTTGCAAGACGACCCTTCCAAAATCCGATGTGATAATGAATCTGGTGGGTGAAGAGGGTGATGAGTATCCGACAGTATTCTTGGCCCGGAAATCTGGACTTAGCGGTGGATGGAAAAGATTTTCTGTTGCTCATAAATTAGTAGATGGGGATGCATTGGTTTTCCAATTAGTCAGGCCTACAAAATTCAAGGTGATCATTGAACTGCACTGCAGACTAAGCACCTTCATTATCCCCACCATGGAGTACTTCTGA 654 0.4878 MVAAKLTYEECRRKRLEENNKRLQALNLPLLSQALRESLTPKSSPAKNSKPRRVREQQVPLRRSSRVANKAYQAQKEGRDLSNRVYASEEARTCAMERAEELQASLEPQYPSFLKSMLQSHVTGGFWLGLPVHFCKTTLPKSDVIMNLVGEEGDEYPTVFLARKSGLSGGWKRFSVAHKLVDGDALVFQLVRPTKFKVIIELHCRLSTFIIPTMEYF* 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0882 217 Gene3D - 89 203 IPR015300 -
Vvi18g0882 217 SMART B3_2 113 207 IPR003340 GO:0003677
Vvi18g0882 217 Pfam B3 DNA binding domain 113 201 IPR003340 GO:0003677
Vvi18g0882 217 SUPERFAMILY DNA-binding pseudobarrel domain 106 200 IPR015300 -
Vvi18g0882 217 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 45 201 IPR044837 -
Vvi18g0882 217 Coils Coil 6 26 - -
Vvi18g0882 217 ProSiteProfiles B3 DNA-binding domain profile. 113 204 IPR003340 GO:0003677
Vvi18g0882 217 MobiDBLite consensus disorder prediction 38 68 - -
Vvi18g0882 217 CDD B3_DNA 111 200 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0882 Vvi-Chr18 9025103 9026342 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0882 1 200 B3 DNA Binding Superfamily AT3G19184 50.224 1.59e-62 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vvi18g0882 B3 1.2e-12 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0882 - - vvi:100248836 380.563