Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0881 ATGTCCACCAGGAGTGAACATCAAACTGTCCCGCTCTCGGTGCTGTTGAAGCGGGAATTGGCCAGTGAGAAGATTGAGAAACCTGATATTATACATGGACAGGCCAGCCAAAGCAAGAAAGGGGAGGACTTCACTTTACTCAAGACCGAATGCCAAAGGGTGGTTGGAGATGGGGTTTCTACATACTCGGTTTTTGGGCTATTTGATGGACATAATGGATCTGCAGCTGCTATATACTCAAAAGAGAATCTTCTAAACAATGTTTTAGCTGCTATTCCTCCAGAACTTAGCAGAGATGAGTGGGTAGCTGCCTTACCTAGGGCTTTGGTTGCAGGGTTTGTTAAGACAGATATAGATTTCCAAGAGAAAGCACGAACTTCAGGAACAACTGTTACCTTTGTTATAATAGAAGGATGGGTGGTAACTGTTGCTTCCGTTGGTGATTCACGGTGCATACTTGAATCTGCTGAAGGTGATATATACCATTTGTCAGCAGACCATAGACTTGAATGCAATGAAGAGGAGAGAGATCGTATCACTGCAAGTGGGGGTGAGGTCGGTCGACTGAATACAGGTGGTGGTGCAGAGATTGGTCCTTTGAGATGCTGGCCTGGTGGTTTGTGCCTTTCCCGATCCATTGGTGATATGGATGTTGGAGAGTTCATTGTTCCGGTTCCTTATGTAAAGCAAGTGAAGTTGTCTACTGCTGGTGGTAGGCTCATAATTTCAAGTGATGGTGTCTGGGATGCTTTATCACCTGAAATGGCTTTTGATTGTTGTCGTGGGATGCCGGCAGATGCAGCAGCTACTCAAGTTGTTAAGGAAGCTTTACATGTAAAGGGACTGCGAGATGATACAACTTCCATTGTGATTGATATACAACCACCAGAAAAGGTACCTGCTGCTCCTTTGCCACCACCAAAGAAGCAGGGAAAAGGGGTTTTCAAGTCCATGTTTCGCAAGAAGCCATCAGAGTCATCTTCTCATGTTGACAAAGAATATAGTGAACCAGATGTGGTGGAGGAGTTATTTGAGGAAGGATCTGCTATGCTTGCCGAAAGGCTAGATGCGAAATACCCGATATGCAACGTGTTTAAGTTGTTCATGTGTGCAGTTTGTCAAGTAGAGATGAAACCTGGAGAGGGTATATCTATACACGCTGGTTCATCTAATGCAGGAAAATTACGCCCCTGGGATGGCCCCTTCCTTTGCTCAAGTTGCCAGGAGAAGAAAGAAGCCATGGAAGGGAGAAGAGGAGATGGATCTAGATATAGTAGTGGAAGTGACTAG 1290 0.4519 MSTRSEHQTVPLSVLLKRELASEKIEKPDIIHGQASQSKKGEDFTLLKTECQRVVGDGVSTYSVFGLFDGHNGSAAAIYSKENLLNNVLAAIPPELSRDEWVAALPRALVAGFVKTDIDFQEKARTSGTTVTFVIIEGWVVTVASVGDSRCILESAEGDIYHLSADHRLECNEEERDRITASGGEVGRLNTGGGAEIGPLRCWPGGLCLSRSIGDMDVGEFIVPVPYVKQVKLSTAGGRLIISSDGVWDALSPEMAFDCCRGMPADAAATQVVKEALHVKGLRDDTTSIVIDIQPPEKVPAAPLPPPKKQGKGVFKSMFRKKPSESSSHVDKEYSEPDVVEELFEEGSAMLAERLDAKYPICNVFKLFMCAVCQVEMKPGEGISIHAGSSNAGKLRPWDGPFLCSSCQEKKEAMEGRRGDGSRYSSGSD* 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0881 429 FunFam probable protein phosphatase 2C 12 32 299 - -
Vvi18g0881 429 Gene3D - 31 300 IPR036457 -
Vvi18g0881 429 ProSiteProfiles PPM-type phosphatase domain profile. 24 293 IPR001932 -
Vvi18g0881 429 SUPERFAMILY PP2C-like 38 295 IPR036457 -
Vvi18g0881 429 SMART PP2C_4 21 291 IPR001932 -
Vvi18g0881 429 CDD PP2Cc 39 293 IPR001932 -
Vvi18g0881 429 PANTHER PROTEIN PHOSPHATASE 32 292 IPR015655 GO:0004722|GO:0006470
Vvi18g0881 429 Pfam Protein phosphatase 2C 53 277 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0881 Vvi-Chr18 9013255 9021283 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0881 1 429 PP2C-type Phosphatase Gene Family AT1G47380 80.420 0.0 729
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0881 - - vvi:100260807 813.142