Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0855 ATGGACGGCGCCGATGGAACCGTGAAGTTTGGGCCGCTTAACATGAAGGCCGATCCATATCTAGATTGTGCACAGGACGTGGCGGTTTCGTCGCCTGTGACGAGGCAGAAGGCCGCTGCTGCCAAGCAGTTTATTGAGAATCATTACAAGAACTACCTTCAAGGCTTGCAAGATCGCAAAGAGAGACGTAGAGCACTTCAGAGAAGAGCACAGGAAGCTCAGGTTTCAAATGAGGAGCAAGAGCAGATGCTAAGGAGTTTGGAACGCAAAGAAACTGAGTATATGAGACTTCAAAGACATAAAATTAGAATTGATGACTTTGAACAATTGACTATCATTGGCAAAGGTGCATTTGGCGAGGTTAGGTTATGTCGTGGTAAAAGTACCGGAGAGATTTTTGCCATGAAGAAATTGAAGAAATCAGAGATGCTTAGCCGTGGACAGGTTGAGCATGTTCGGTCAGAAAGGAACTTGCTTGCAGAGGTTGATAGTCGGTGCATTGTAAAGCTCTTCTATTCTTTCCAAGACTCTGATTTCTTGTACCTTATCATGGAGTATTTACCTGGTGGTGATATTATGACTTTACTGATGAGAGAAGATGTTCTTTCTGAAGATGTTGCACGTTTTTACATAGCAGAGAGCATTCTAGCTATTCACTCAATTCATCAACACAGCTATGTCCATAGAGACATAAAGCCAGATAACTTGATATTGGACAAGAATGGGCATTTGAAGCTTTCAGATTTTGGCTTGTGTAAGCCACTGGATGACAAATATTCAACAATATTATTGGAAAATGATGTTTTTAATACCCAGGAATCCACAAGTGAAACTGAGGGATATTCGGGATATGACAGAGCCCCTTGGTCAATGCCAAAAGAACGATTGCAACAATGGAAACGTAACCGTCGTGCATTGGCTTATTCTACTGTTGGTACTCTTGATTATATGGCGCCTGAAGTCTTGCTGAAGAAAGGATATGGTATGGAGTGTGATTGGTGGTCGTTGGGGGCAATCATGTATGAAATGCTCATAGGCTACCCTCCTTTTTGTTCTGATGATCCAAGGATCACATGCCGCAAGATTATCAATTGGAAAACATGCTTGAAATTGCCTGAGGAACCCAAAATATCTGATGAAGCTAAGGATCTGATCTGTCATTTGCTATGTGATGTTGAAACAAGGCTGGGGACTGGAGGAGTGGAAGAAATAAAGGCACATCCATGGTTTAGATGTATTCAATGGGACAAGCTATATGAAATGGAAGCTGCTCATAAACCTACTGTTACTGGAGAGCTAGACACCCAGAATTTCGAGAAGTTTGATGAAGTAGAAGGTCCACCATCAACAATACCGAGAGTGGGACCTTGGAGAAAGATGTTGACATCAAAAGATGCCAATTTCATAGGATATACTTTCAAGAAATCAGATATCATGAAATCAATTGGAACTTCAGGTACAGACGTTAGATCTAATGGATCTTCAAAGGCCCCCTCTCTGGTTTCATTGTTTGGCCAGATTGACCTTCAAGAAACTGCAACAGAGGATGAGGAGAAGGAGGATGCTTTAGTTTTTTAA 1578 0.4189 MDGADGTVKFGPLNMKADPYLDCAQDVAVSSPVTRQKAAAAKQFIENHYKNYLQGLQDRKERRRALQRRAQEAQVSNEEQEQMLRSLERKETEYMRLQRHKIRIDDFEQLTIIGKGAFGEVRLCRGKSTGEIFAMKKLKKSEMLSRGQVEHVRSERNLLAEVDSRCIVKLFYSFQDSDFLYLIMEYLPGGDIMTLLMREDVLSEDVARFYIAESILAIHSIHQHSYVHRDIKPDNLILDKNGHLKLSDFGLCKPLDDKYSTILLENDVFNTQESTSETEGYSGYDRAPWSMPKERLQQWKRNRRALAYSTVGTLDYMAPEVLLKKGYGMECDWWSLGAIMYEMLIGYPPFCSDDPRITCRKIINWKTCLKLPEEPKISDEAKDLICHLLCDVETRLGTGGVEEIKAHPWFRCIQWDKLYEMEAAHKPTVTGELDTQNFEKFDEVEGPPSTIPRVGPWRKMLTSKDANFIGYTFKKSDIMKSIGTSGTDVRSNGSSKAPSLVSLFGQIDLQETATEDEEKEDALVF* 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0855 525 ProSitePatterns Serine/Threonine protein kinases active-site signature. 226 238 IPR008271 GO:0004672|GO:0006468
Vvi18g0855 525 FunFam Non-specific serine/threonine protein kinase 191 258 - -
Vvi18g0855 525 SMART pkinase_C_6 411 475 IPR000961 GO:0004674|GO:0005524|GO:0006468
Vvi18g0855 525 CDD STKc_NDR_like 105 474 - -
Vvi18g0855 525 FunFam Non-specific serine/threonine protein kinase 78 190 - -
Vvi18g0855 525 SMART serkin_6 107 410 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g0855 525 SUPERFAMILY Protein kinase-like (PK-like) 81 461 IPR011009 -
Vvi18g0855 525 Gene3D Transferase(Phosphotransferase) domain 1 307 428 - -
Vvi18g0855 525 Gene3D Phosphorylase Kinase; domain 1 429 440 - -
Vvi18g0855 525 Coils Coil 56 97 - -
Vvi18g0855 525 CDD MobB_NDR_LATS-like 41 102 - -
Vvi18g0855 525 Pfam Protein kinase domain 107 410 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g0855 525 FunFam Non-specific serine/threonine protein kinase 309 428 - -
Vvi18g0855 525 Gene3D Transferase(Phosphotransferase) domain 1 191 258 - -
Vvi18g0855 525 ProSiteProfiles Protein kinase domain profile. 107 410 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g0855 525 ProSitePatterns Protein kinases ATP-binding region signature. 113 136 IPR017441 GO:0005524
Vvi18g0855 525 Pfam Protein kinase C terminal domain 429 473 IPR017892 GO:0004674|GO:0005524|GO:0006468
Vvi18g0855 525 Gene3D Phosphorylase Kinase; domain 1 78 190 - -
Vvi18g0855 525 PANTHER SERINE/THREONINE-PROTEIN KINASE 28 462 - -
Vvi18g0855 525 ProSiteProfiles AGC-kinase C-terminal domain profile. 411 483 IPR000961 GO:0004674|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0855 Vvi-Chr18 8790666 8809180 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0855 1 511 AGC Kinase Gene Family AT5G09890 78.125 0.0 837
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_NDR Vvi18g0855 Pkinase 2e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0855 K08790 - vvi:100257460 1046.96