Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0848 ATGGATATTGACCTGTTAAAGTCTGCCCCAGAAGATCAGATGGAGATGATGATGATGCAGATGGACAAGCTTCCCGAATTCTGCGGGACCTATAATGAAATGGCCGAATTGCCGTCGATGGGGTTTTCTGGAGGTGGCAGTGCTACCATGCCTCAAATCTTTGATAACCCACATGTTGCTTCACCCACATTCATAAACTCACCCTCCACCATATCATTCAACGGAACCACGCCTCCCCAAGAACCAACTGCACCGGCCTTTTTAACCAATTCAGCTGTAGCGAGATGGAGGGGCACCGGAGAATTATCTGGTGTGTGCAATTTGTCTACACCAGCTCAGAAGCGAAATTCCATGGCGGCCATGAGGGAGATGATATTCCGGATTGCAGCCATGCAGCCCGTTCACATAGACCCAGAATCGGTGAAGCCGCCAAAGCGGAGGAACGTGAAGATATCAAAGGACCCTCAGAGCGTTGCTGCACGTCATCGGAGAGAAAGGATAAGCGAGAAAATAAGGATACTTCAAAGACTAGTCCCTGGAGGAACCAAAATGGACACAGCTTCCATGCTGGACGAAGCAATTCACTATGTGAAGTTTTTGAAGACCCAGGTGCAATCCCTGGAGCGAGCCGCTGCTAATAGGCCGGCCGGCATTGGATTCCCGGTAACCATGTCTAATGGGAGTTATCTTCCCATCACAAAACAATACCAACCTTCCCAAAACCTTCACCATTATCCAGATGCTTAA 747 0.49 MDIDLLKSAPEDQMEMMMMQMDKLPEFCGTYNEMAELPSMGFSGGGSATMPQIFDNPHVASPTFINSPSTISFNGTTPPQEPTAPAFLTNSAVARWRGTGELSGVCNLSTPAQKRNSMAAMREMIFRIAAMQPVHIDPESVKPPKRRNVKISKDPQSVAARHRRERISEKIRILQRLVPGGTKMDTASMLDEAIHYVKFLKTQVQSLERAAANRPAGIGFPVTMSNGSYLPITKQYQPSQNLHHYPDA* 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0848 248 Gene3D - 150 216 IPR036638 GO:0046983
Vvi18g0848 248 Pfam Helix-loop-helix DNA-binding domain 160 200 IPR011598 GO:0046983
Vvi18g0848 248 CDD bHLH_AtIND_like 152 208 - -
Vvi18g0848 248 SMART finulus 157 206 IPR011598 GO:0046983
Vvi18g0848 248 FunFam BHLH transcription factor 154 217 - -
Vvi18g0848 248 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 104 232 IPR045843 GO:0003700|GO:0006355
Vvi18g0848 248 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 155 210 IPR036638 GO:0046983
Vvi18g0848 248 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 151 200 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0848 Vvi-Chr18 8724790 8725536 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0848 14 218 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G50330 55.340 4.95e-50 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vvi18g0848 HLH 1.4e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0848 - - vvi:100247090 485.337