Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0847 ATGGACGGAACGGAGGTGGTCGTGGCTTCGTCCCCTGTAGATGCCGGCATCAGTTGCTGGGACCTGCAGTCAGGGGCGGAGCATCTCCGTCATCGGTCCTGCGCTTCTCCTCCTCACGGCCTCGTCTGCGTCGCCGACCGCTTCTTTGCCTCTTCTCAGCTCCGCGACTCCTCCTCCTCCTCCTCCTCCGGCTCCATTTTCTATTGGTCCTGGTCTAAGCCACAGGTGGAAGTTAAGAGCTTTCCCGCTGAACCAATCAAGCCGCTAGCGGCTAACCGTGAGGGAACTTACATTGCTGGAGGGGGTTTATCAGGGGATATATATTTTTGGGAGGTTGCCAGTGGTAGGCTTCTTAAGAAGTGGCATGCTCATTATAGGGCTGTTACTTGCTTAGTGTTTTCTGATGATGAATCGCTACTTATTTCTGGGGCAGAGGATGGATGCGTGCGGGTTTGGTCCCTTTTCATGATATTTGATGATTTGAGGAGGGAGGAAGCAGGACACCTATATGAGCATAGTTTCTCTGAGCACACTTTGCGGGTTACTGATATTGTCACGGGCTATGGAGGAGGCAATGCAATTATAGTGTCTGCTTCTGAGGATAGAACCTGTAAGGTTTGGAGCTTGTCTACGGGGAGATTGTTAAGAAATGTTGTATTTCCCTCGATAATTGATGCAATTGCATTGGACCCTGGGGAACATGTTTTCTATGCTGGCAGTAGAGATGGCAAGATATATATTGCTGCACTAAATGCCGTAGGCTCCTCTAGCAACTCTTATGGGATGCATATTATTGGCTCATTGTCTGATCACAGTAAGGCTGTTACTTGCTTAGCATTTGCTACGGATGGGATCTTATTGGTTTCTGGATCAGAGGATGGAATGGTACGAGTCTGGGACACTAAAACCCGTAACATCTTTCGCATTTTCAAGCATGCAAAAGGTCCTGTGAGCAATATTCTTGTTGTTAGGCGACCTAATGACTCAAACCCTCGGAATTCACAAACTTCCTCAAAGAAGCATGGGTCATTCTTATCACCTCCACTTGATAAATATTTGAATTCGTCTGATGAAAATGAAGATGCTAAGGTCTTCATCGGTTGCCAGACTACATTCAGTAAATCTGTGGATGCTTCATACCGCAGTTGTCACATCATTATTGATCAAATCAAAGAACTCCAGCAACAAGGGTCTTCAGCTGCTACTGAAATGGAGATGGAGAGATTGAAGATTGATTCCCAAAAATCTGTGCAAATGGTACAACAATGGAAGAAAATGTATGAAAACTTGCATCAATTCTGTGTAAATGAGCTTTTGGATGCAGACCATGCAGGAGTCTCCAATTGA 1347 0.461 MDGTEVVVASSPVDAGISCWDLQSGAEHLRHRSCASPPHGLVCVADRFFASSQLRDSSSSSSSGSIFYWSWSKPQVEVKSFPAEPIKPLAANREGTYIAGGGLSGDIYFWEVASGRLLKKWHAHYRAVTCLVFSDDESLLISGAEDGCVRVWSLFMIFDDLRREEAGHLYEHSFSEHTLRVTDIVTGYGGGNAIIVSASEDRTCKVWSLSTGRLLRNVVFPSIIDAIALDPGEHVFYAGSRDGKIYIAALNAVGSSSNSYGMHIIGSLSDHSKAVTCLAFATDGILLVSGSEDGMVRVWDTKTRNIFRIFKHAKGPVSNILVVRRPNDSNPRNSQTSSKKHGSFLSPPLDKYLNSSDENEDAKVFIGCQTTFSKSVDASYRSCHIIIDQIKELQQQGSSAATEMEMERLKIDSQKSVQMVQQWKKMYENLHQFCVNELLDADHAGVSN* 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0847 448 PANTHER WD-REPEAT PROTEIN 18 5 439 IPR045227 -
Vvi18g0847 448 SUPERFAMILY WD40 repeat-like 13 321 IPR036322 GO:0005515
Vvi18g0847 448 SMART WD40_4 211 249 IPR001680 GO:0005515
Vvi18g0847 448 SMART WD40_4 167 208 IPR001680 GO:0005515
Vvi18g0847 448 SMART WD40_4 114 153 IPR001680 GO:0005515
Vvi18g0847 448 SMART WD40_4 261 300 IPR001680 GO:0005515
Vvi18g0847 448 SMART WD40_4 74 111 IPR001680 GO:0005515
Vvi18g0847 448 MobiDBLite consensus disorder prediction 322 347 - -
Vvi18g0847 448 Gene3D - 221 330 IPR015943 GO:0005515
Vvi18g0847 448 PRINTS G protein beta WD-40 repeat signature 140 154 IPR020472 -
Vvi18g0847 448 PRINTS G protein beta WD-40 repeat signature 287 301 IPR020472 -
Vvi18g0847 448 PRINTS G protein beta WD-40 repeat signature 195 209 IPR020472 -
Vvi18g0847 448 ProSiteProfiles Trp-Asp (WD) repeats profile. 121 154 IPR001680 GO:0005515
Vvi18g0847 448 ProSitePatterns Trp-Asp (WD) repeats signature. 287 301 IPR019775 -
Vvi18g0847 448 Gene3D - 1 220 IPR015943 GO:0005515
Vvi18g0847 448 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 268 303 - -
Vvi18g0847 448 ProSiteProfiles Trp-Asp (WD) repeats profile. 268 309 IPR001680 GO:0005515
Vvi18g0847 448 ProSiteProfiles Trp-Asp (WD) repeats profile. 174 217 IPR001680 GO:0005515
Vvi18g0847 448 MobiDBLite consensus disorder prediction 323 347 - -
Vvi18g0847 448 FunFam Protein ROOT INITIATION DEFECTIVE 3 1 247 - -
Vvi18g0847 448 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 121 154 - -
Vvi18g0847 448 Pfam WD domain, G-beta repeat 116 153 IPR001680 GO:0005515
Vvi18g0847 448 Pfam WD domain, G-beta repeat 172 208 IPR001680 GO:0005515
Vvi18g0847 448 Pfam WD domain, G-beta repeat 265 300 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0847 Vvi-Chr18 8713476 8718217 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0847 98 310 U-box Gene Family AT1G04510 26.267 4.70e-13 68.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0847 K14829 - vvi:100264347 885.174