Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0846 ATGGCTCTTATGCTGGACAATTGCGAAGGCATCTTACTCTCTTTAGATTCCCACAAATCTGTGCCAGCGCCCTTTCTCACCAAGACCTACCAACTGGTGGACGACCCAGCCACTGATCACATCGTCTCTTGGGGTGAAGACGACACTACCTTCGTGGTGTGGCGTCCTCCTGAGTTCGCTCGCGATCTCCTTCCCAATTACTTCAAACACAACAACTTCTCAAGCTTCGTCAGACAGCTCAACACCTATGGTTTTAGAAAGATTGTACCGGATAGATGGGAGTTTGCCAACGAGTTCTTCAAGAAAGGAGAGAAGCACTTACTCTGCGAGATCCATAGAAGAAAAACCTCACAACCTCAAGTGCCCATGAACCATCACCACCATCACCATTCTCCACTTGGTGTCAATGCTGGACCTGGCTTCTTTCCCTTCCCTGGCCGAGTAAGCATTTCTCCGCCTGACTCCGACGACCAAGCCAATTGGTGTGATTCCCCGACTCTCTCCTCCCCAACAGCAGCAACTGGAGTTTCGGTCGTTAGTGGTGGCTATAACAGCTCCGTCACGGCGTTGTCTGAGGATAATGAGAGACTCCGGCGAAGTAACTCCATTCTCATGTCTGAGCTAGCTCACATGAGAAAGCTTTACAATGACATTATCTACTTTGTGCAAAACCATGTGAAGCCTGTTGCTCCCAGTAATTCCTACCCATCTTCTTTAGTTATCTGTAACCCACCCTCTTCTGCTACTACCGCTGCTGCTACTATTACTTGCAGCAGTACTGCAATGGTGCAAAAGCCTCTGAACCAGTTACTTGGCTGTTATCAGTCCAACCCTAAGCAAGCTCCTCGGAATCATGGTATGGGTTCCTTCAACTCTAGTACTACTACATCGTCAAAGAGCTCTTTAACCGTGTTGGAAGAAACCAACGGCAGTAGCTGTCGAACTAAGCTGTTTGGTGTGCCTCTTCAATCCAAGAAGAGATTGCACCCAGAGTATGCTTCTACTACTACGAGCATGGAGACTAACAAGGCTCGATTGGTTTTGGATAAGGATGATTTAGGGTTGAATCTCATGCCTCCTTCTCCTTGTTAG 1092 0.4799 MALMLDNCEGILLSLDSHKSVPAPFLTKTYQLVDDPATDHIVSWGEDDTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDRWEFANEFFKKGEKHLLCEIHRRKTSQPQVPMNHHHHHHSPLGVNAGPGFFPFPGRVSISPPDSDDQANWCDSPTLSSPTAATGVSVVSGGYNSSVTALSEDNERLRRSNSILMSELAHMRKLYNDIIYFVQNHVKPVAPSNSYPSSLVICNPPSSATTAAATITCSSTAMVQKPLNQLLGCYQSNPKQAPRNHGMGSFNSSTTTSSKSSLTVLEETNGSSCRTKLFGVPLQSKKRLHPEYASTTTSMETNKARLVLDKDDLGLNLMPPSPC* 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0846 363 SMART hsfneu3 21 114 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vvi18g0846 363 PRINTS Heat shock factor (HSF) domain signature 76 88 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vvi18g0846 363 PRINTS Heat shock factor (HSF) domain signature 63 75 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vvi18g0846 363 PRINTS Heat shock factor (HSF) domain signature 25 48 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vvi18g0846 363 MobiDBLite consensus disorder prediction 278 303 - -
Vvi18g0846 363 FunFam Heat stress transcription factor B-4 17 115 - -
Vvi18g0846 363 SUPERFAMILY "Winged helix" DNA-binding domain 22 114 IPR036390 -
Vvi18g0846 363 Pfam HSF-type DNA-binding 25 114 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vvi18g0846 363 Gene3D - 17 116 IPR036388 -
Vvi18g0846 363 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 18 297 IPR027725 -
Vvi18g0846 363 ProSitePatterns HSF-type DNA-binding domain signature. 64 88 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0846 Vvi-Chr18 8708604 8709838 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0846 1 358 HSF AT1G46264 54.545 4.44e-121 352
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Vvi18g0846 HSF_DNA-bind 2.8e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0846 K09419 - vvi:100259171 702.59