Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0839 ATGCCTGAGGGTGCGTTTTTGAACGATGAGCTCTCAAAACATACCTCAATTTTTGGTCTGCGCTTGTGGGTAGTTGTGGGCATATGTGTGGGGGCTGGCATTGTTCTTGTTCTGTTCCTCATATCGCTTTGGTTCACTTCAAGGCGGAACAGTGCCAAGTCCTCCCACAAACCCACCATCCCGAATGTGTCCAAAGAAATCCAGGAAATCAGAATCGACCATTCCCGAAACCCAGCGAACCCCAACCCTGACCCCAAGACTCATCATCCTCCAAATGCGAACCCACTCCCTGAATCGGACCCCTTTGCCGGGGCGGAGCGACTGCTTCAGCCGGGAGAGGAGAGTCCCGTGGGCCTTCAAAGAATTCACATTGAGATTGGGAAAGATCACCGGATTTCGTACCCGGAACGCGGCGGCGGGTCGTCTCATGGAAGTGGAGAGGCTCGGTCCGGTGATCAGGTGACAATTGCTGTGCCTGAGGTTTCGCATTTGGGTTGGGGACATTGGTACACTCTGAGAGAGCTTGAACTTTCGACCAATGGGTTTGCTGATGAAAACGTGATAGGTGAAGGTGGGTATGGGATCGTTTACCGTGGTGTTTTGGAGGACAATACACAGGTGGCTGTCAAGAATTTGCTCAATAACAGGGGACAAGCTGAGAAGGAGTTTAAGGTTGAAGTTGAAGCAATTGGGCGTGTCAGGCATAAGAACTTGGTGAGGCTGCTTGGTTACTGTGCTGAAGGAGCCCATAGGATGCTAGTTTATGAGTATGTTGACAATGGGAACTTAGAACAGTGGCTTCATGGAGATGTGGGGCCTCACAGCCCTCTTACTTGGGACATCCGAATGAACATTATAATTGGAACAGCCAAAGGGTTGACTTATCTGCACGAGGGGCTTGAGCCTAAGGTCGTCCATCGTGATATTAAGTCGAGCAACATTTTGCTTGATAAGCAGTGGAATCCTAAAGTGTCTGACTTTGGCCTGGCGAAGCTCTTGGGCTCAGAGAGGAGTTATGTCACAACTCGTGTGATGGGAACATTTGGCTATGTAGCTCCAGAATACGCTAGTACTGGCATGTTGAATGAAAGAAGTGATGTATACAGTTTTGGTATTCTTCTTATGGAGATAATTTCTGGGAGAAACCCAGTTGATTATAGCCGGCCTCCGGGAGAGGTGAACCTTGTTGAGTGGCTTAAAGCAATGGTTACAAACCGGAATGCAGAGGGTGTTTTGGATCCCAAGATACCTGAGAAGCCATCTTCCAGGGCATTGAAGCGTGCCCTTTTAGTGGCTTTGCGCTGCGTGGACCCAAATGCCCAGAAGAGGCCAAAGATGGGGCATGTGATTCATATGCTTGAAGCTGATGATTTCCCCTTCCGAGATTTTCAGGATCGTAGAGCTGGAAGGGAACATGGGCGCGCACAGCGTGATGGAATGAAGGATAGGTTTCTGGAGAAACGGATGATTGAATCAGGTGACAGTAGTGGGTATGAAAGTGGTGCTCAAAACAATAGATCCTTGTGGAAAAAGCCAGAAGAACTCGTAGAAGAGCAGTAG 1560 0.491 MPEGAFLNDELSKHTSIFGLRLWVVVGICVGAGIVLVLFLISLWFTSRRNSAKSSHKPTIPNVSKEIQEIRIDHSRNPANPNPDPKTHHPPNANPLPESDPFAGAERLLQPGEESPVGLQRIHIEIGKDHRISYPERGGGSSHGSGEARSGDQVTIAVPEVSHLGWGHWYTLRELELSTNGFADENVIGEGGYGIVYRGVLEDNTQVAVKNLLNNRGQAEKEFKVEVEAIGRVRHKNLVRLLGYCAEGAHRMLVYEYVDNGNLEQWLHGDVGPHSPLTWDIRMNIIIGTAKGLTYLHEGLEPKVVHRDIKSSNILLDKQWNPKVSDFGLAKLLGSERSYVTTRVMGTFGYVAPEYASTGMLNERSDVYSFGILLMEIISGRNPVDYSRPPGEVNLVEWLKAMVTNRNAEGVLDPKIPEKPSSRALKRALLVALRCVDPNAQKRPKMGHVIHMLEADDFPFRDFQDRRAGREHGRAQRDGMKDRFLEKRMIESGDSSGYESGAQNNRSLWKKPEELVEEQ* 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0839 519 Gene3D Transferase(Phosphotransferase) domain 1 258 463 - -
Vvi18g0839 519 ProSiteProfiles Protein kinase domain profile. 182 461 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g0839 519 Pfam Protein kinase domain 183 451 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g0839 519 CDD STKc_IRAK 188 454 - -
Vvi18g0839 519 FunFam Putative receptor-like serine/threonine-protein kinase 258 470 - -
Vvi18g0839 519 Gene3D Phosphorylase Kinase; domain 1 153 257 - -
Vvi18g0839 519 MobiDBLite consensus disorder prediction 468 493 - -
Vvi18g0839 519 ProSitePatterns Protein kinases ATP-binding region signature. 188 210 IPR017441 GO:0005524
Vvi18g0839 519 SUPERFAMILY Protein kinase-like (PK-like) 163 454 IPR011009 -
Vvi18g0839 519 FunFam Probable serine/threonine-protein kinase At1g01540 162 257 - -
Vvi18g0839 519 ProSitePatterns Serine/Threonine protein kinases active-site signature. 304 316 IPR008271 GO:0004672|GO:0006468
Vvi18g0839 519 MobiDBLite consensus disorder prediction 130 152 - -
Vvi18g0839 519 MobiDBLite consensus disorder prediction 468 519 - -
Vvi18g0839 519 SMART serkin_6 182 460 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g0839 519 MobiDBLite consensus disorder prediction 83 97 - -
Vvi18g0839 519 PANTHER OS01G0323000 PROTEIN 4 479 - -
Vvi18g0839 519 MobiDBLite consensus disorder prediction 74 103 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0839 Vvi-Chr18 8634043 8636942 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0839 136 498 Trihelix Transcription Factor Family AT1G70460 43.968 5.75e-90 288
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-V Vvi18g0839 Pkinase 1.4e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0839 - - vvi:100243696 1033.48