Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0838 ATGTCTGAAGAAGCAAGCCATGGAAATCTGTGGCAAAACCATTCTTGTGATTTCTTGAATTCAGATAGTAATTCAGGTGGTAGTGGTGGAGAAAAGTTGGGGGAAAAGCCACCTGATTCAAGCTCTAATAGCCCCGTTGAGAACCGACAGGGTATGGCACTGGTGGGTCGGAAGCGAGGCAGGCGTGCAAAGGCTAGTGACGGTGGTGGTGGTGAATCAGAGCATGAGACTCACATATGGACGGAGAGAGAAAGGAGGAAGAAGATGAGGAACATGTTCTCTAGTCTTCATGCTTTGCTTCCTCAATTGCCTCCTAAGGCAGACAAGTCCACCATAGTTGACGAAGCAGTGAACTATATCAAGACCCTTCAAAACTCTCTTACAAAACTTCAAAAGCAAAGGCATGAAATGCAGCAGGGTGCAACTGCTGTTGACTGTGAACAATCCATCATCACATCCCAAGCGTTAGCTCCGGACACGAGAGAAACATCTTTGCCCGCAGGTGATAGATCATTGAAGAACTACTTCTCACTGCCCACAAACAAGCCAAACTTGCTTTCAGCACCTTCTTCTTCATTGTGCTTCCAAACATGGTTTTCTCCAAACGTTGTGGTGAGCATGTGTGGCAATGATGCGCATATCAGCGTGTGTTCATCAAGGAAACCCGGGTTGCTAGCCACCATCTTCTACATACTGGAGAAACATAAGCTGGATGTGCTGTCTGCCCACATTTCCTCCACTCAGCAGCGCAGCATTTACATGATCCATGCCCATGCTAGTGGAGTTTCAGATGATCAACTTCCAAAGGGATTGACAGTGGAGGAAATATTCAAGCTAGCTGTAGGAGAGATGACCCTTTGGCTCTCATCATGTTAA 876 0.4669 MSEEASHGNLWQNHSCDFLNSDSNSGGSGGEKLGEKPPDSSSNSPVENRQGMALVGRKRGRRAKASDGGGGESEHETHIWTERERRKKMRNMFSSLHALLPQLPPKADKSTIVDEAVNYIKTLQNSLTKLQKQRHEMQQGATAVDCEQSIITSQALAPDTRETSLPAGDRSLKNYFSLPTNKPNLLSAPSSSLCFQTWFSPNVVVSMCGNDAHISVCSSRKPGLLATIFYILEKHKLDVLSAHISSTQQRSIYMIHAHASGVSDDQLPKGLTVEEIFKLAVGEMTLWLSSC* 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0838 291 CDD bHLH_AtbHLH_like 78 131 IPR045239 -
Vvi18g0838 291 ProSiteProfiles ACT domain profile. 213 291 IPR002912 -
Vvi18g0838 291 MobiDBLite consensus disorder prediction 1 79 - -
Vvi18g0838 291 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 72 145 IPR036638 GO:0046983
Vvi18g0838 291 Pfam Helix-loop-helix DNA-binding domain 76 124 IPR011598 GO:0046983
Vvi18g0838 291 SMART finulus 81 129 IPR011598 GO:0046983
Vvi18g0838 291 Gene3D - 70 140 IPR036638 GO:0046983
Vvi18g0838 291 MobiDBLite consensus disorder prediction 1 28 - -
Vvi18g0838 291 PANTHER BHLH DOMAIN-CONTAINING PROTEIN 27 288 IPR044278 GO:0003700|GO:0006355|GO:0009960
Vvi18g0838 291 MobiDBLite consensus disorder prediction 60 79 - -
Vvi18g0838 291 Coils Coil 113 140 - -
Vvi18g0838 291 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 73 123 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0838 Vvi-Chr18 8625142 8627490 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0838 21 290 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G49770 35.880 4.58e-50 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vvi18g0838 HLH 2.9e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0838 - - vvi:100266006 565.459