Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0835 ATGGCGGATCTGTATGGAACAAACGTTTCTTCTTCTGCCACCGCTCTCGCTCTCGAATCAGAAGATATCTCTGCGTTTCTTCACCACTTCCTCCATAATCAGTCTTCTTCTTCTACTACTACTAGTACTATTAAGGCTAAGCACGCGCACTCCTTTTCGCCTGCGCTACTACATCCGGAGACGGCATCCGCCGCCGAAGTGTTGTCTCCACAGAAGGATCGGCGCCGGTTCTCTCGATCGGCGATTCTTTCCGACTCCGACTGCCGAGTTAGGAGCGGACTCTCTACGGCTGGATCATCTGCCGTGGTTGAATCCTCCACCGGCATTAACTTCTCAGATCACGGGGCCTATTGCCCTGCGGGTATGAAGGAGACTGCTGGGAACACTTTCAGTTCTATTGCTGCTGTGGATTCTGAGGCGATCACGGTTTCCAGGAAGAGAAGAATGTTTTCCATGGAGAATAGCGTGGACGACTTTGGTTGTGATAGCGAGAAGGGTCCTGAAGCATCGGATGTGCCCTCGAATCCAGCCCCGTCTCGGTCTTCTTCAAAGAGGAGCAGAGCAGCTGAGGTCCATAATTTGTCAGAAAAGAGAAGGAGGAGCAGGATAAATGAAAAAATGAAAGCCTTGCAGAATTTAATTCCTAATTCTAATAAGACGGATAAGGCTTCAATGTTGGATGAAGCCATCGAATACCTGAAGCAGCTTCAGCTCCAAGTTCAGATGCTAACAATGAGAAATGGATTAAGTTTACATCCAATCTACTTACCAGGAGCACTGCAGCCTACGCAGCTGCCCCAAACGGGAGCAGGTTTTGCTGAGGGAAATCTATTGCTTAGCAACAGTGGAACTGGCACACTTCCTGCTAATCAAGAAATCTCAATGCAAACTACATTTGATCTTACCAGCCAACCAATTGCCATACCCACGATGACAAACATGAACAATTCAGATACCTCGTTTGGTTTTGAACATTCGGATCAGCCTCATTATGGACCCTTCAATCTCACAGGATCATCCAAGGAAATCTGCCACGAAGAGGCATTACCAGAACCTCAAGGAGAGATGAACTGCTCCAGGAAAAACTCATCATCTGGTGTGTCTTCCTAA 1110 0.4775 MADLYGTNVSSSATALALESEDISAFLHHFLHNQSSSSTTTSTIKAKHAHSFSPALLHPETASAAEVLSPQKDRRRFSRSAILSDSDCRVRSGLSTAGSSAVVESSTGINFSDHGAYCPAGMKETAGNTFSSIAAVDSEAITVSRKRRMFSMENSVDDFGCDSEKGPEASDVPSNPAPSRSSSKRSRAAEVHNLSEKRRRSRINEKMKALQNLIPNSNKTDKASMLDEAIEYLKQLQLQVQMLTMRNGLSLHPIYLPGALQPTQLPQTGAGFAEGNLLLSNSGTGTLPANQEISMQTTFDLTSQPIAIPTMTNMNNSDTSFGFEHSDQPHYGPFNLTGSSKEICHEEALPEPQGEMNCSRKNSSSGVSS* 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0835 369 CDD bHLH_AtPIF_like 188 249 IPR047265 -
Vvi18g0835 369 FunFam Basic helix-loop-helix transcription factor 182 245 - -
Vvi18g0835 369 Pfam Helix-loop-helix DNA-binding domain 191 237 IPR011598 GO:0046983
Vvi18g0835 369 MobiDBLite consensus disorder prediction 185 202 - -
Vvi18g0835 369 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 184 247 IPR036638 GO:0046983
Vvi18g0835 369 Gene3D - 182 246 IPR036638 GO:0046983
Vvi18g0835 369 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 187 236 IPR011598 GO:0046983
Vvi18g0835 369 Coils Coil 226 246 - -
Vvi18g0835 369 MobiDBLite consensus disorder prediction 157 202 - -
Vvi18g0835 369 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 16 342 IPR031066 -
Vvi18g0835 369 MobiDBLite consensus disorder prediction 345 369 - -
Vvi18g0835 369 SMART finulus 193 242 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0835 Vvi-Chr18 8609146 8612611 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0835 154 362 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G36930 52.804 5.44e-48 165
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vvi18g0835 HLH 4.2e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0835 - - vvi:100245419 699.508