Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0834 ATGCAAGGGCAAAAAGGTGCTATTGGTTCCTTGCCTGAAACATTAAACTTTGACCATGGATCTACATCAAGTGGTGCTGGTTTAGATCAGCAACTTTGCTGGAATAATATGCGGAATCCTGCAGAAAACCGGTTAGCGGATTATATGCAACCACCCAGTGATACAAATCTTGCATTTCTGAATTCTATTAGTCATGGAGGGCAAAACTTGAGTGGATGGAGTTTAGGTGAACCCAGTTCGATTAACACACAAAATATTGTCAGCTGTGATGAATGTAAAACAGAACATGGTTGGGCAACTTCGGTGAGTGGTTGTGCTGGAGCTGGTCCAAGGTTAGAAGAACACCGATGTGAACCATCAAATGTGCTTTCACTGGATAATGTTAATGTAAATCCTAGCAGCAATCAGATTGTCAATGGACCTTTGTTTTTGCAAAGTTCCAGTTCTGATGCTATTGCTCAGAATCTTAATCTAAATGCAGGATTTGTGGGTTCTGGTGGTGATGATCGTCAAGGCTTGGAATGCCCTAATTTATACAAGTCTAGTGGGTCAGAAAATCTTCCATCAGCTAGTAGCTCTTCTGATCCTTTTGGGCCTCGCATTTTGAGTGGTGGATATTTGGTGGAAGAGAATGATGGTAGGGCAGGTAGTTCTTTGGAAGGTCGTCGTTTGTCCTGTAAAAGGAAGGCCCTTGAAGGAAACATTGGCCAATCTTCTGTTGGTGGGAGTTCCAGTAGCTTTCAACGAACAGAAAATAATGTATGGCATGCTGTTGTTCCCGCTCGTTATAATGCTGGTAACGGTTTAAGTATATCTAGCCCCTCAGGGAATATTATTGGTGCTAGCCCTGCAGAACAGGTGAACCCAAGACTTGGGCTGGGTGTGAGGGGAGTAGCTACTGACAGCCTTCCTGTTTTAAATGTGCCAGGAAGTGCAGAAAGCTCTCATAGGAATTTCCGTATGAGGATAAATCCTTCACATCAGCAAGATTCTGTGCCCCATAATTTATTTTCAGCAGGTGGATCTGTTAGGCACTCTAATGTTTCATCACACCAGCAGTCAACAAGACTTATACCAGTTAATCATGCTCCAGACTTGAGGTCAACACCAGCAGCAGACAATGCAAGTTCTCAAAGCCAATCTGTTGTCAACCATGCTCCTAACTTGCCTAGAACCATGCAATCTTTTAGATGGAGTGGAGCTTCTAGCTCAAGACATGGCAATTCATCAAGTCCTCTCATTTCTGGTGAGAGAGATGCTGCACCTCGTGAGGAATCCAGTTCAAGAAGCATGCCAAGAAACACTTTGGAGCATTCAATGTTTTTACCTGCAATTGATCTCAGATCTTTGCCTCAAAATCCTACAAATAGGAATTTAGCTGGTGGAAATATGACCACCCCTGGAAATTCTGCTTCTACTTCTCGGACTGGCTCAAGTTCAGGTGTCAATTCATCATCTGCTCCTACCTGGGGTCCTCCTCGTGATCCTCCTTCACAATATTCACGAAGATTATCAGAATATGTTCGCCGATCATTGTTTTCTTCTGTTGGTGCTGACTCTGGAGGCCAGAGCAGCAACTATTCTCCATTACATTCAGGTCCTTCACCTTCCTCACAGGAGGTGGCGCCTTCATCTGGAGCTGGCAACCAGGGGCATCATCAATCATATCCAAGGTCAGCATTATTGATGGAAAGACATGGTGATGGTGTTCTCGGAATTCCCTATTCATTGCGTACCTTGGCTGCTGCCAGTGAAGGAAGAAGCAGGCTAGTATCTGAGATTCGCAATGTCTTGGATCTCATGCGTAGGGGTGAGGACTTGCGATTTGAGGATGTCATGATCCTGGACCAGTCAGTATTTTTTGGGGTGGCTGATATTCATGATCGTCATAGGGATATGCGACTTGATGTGGATAATATGTCTTATGAGGAGCTATTGGCTCTGGAAGAGCGCATCGGAGATGTGTGCACTGGATTGAGCGAAGAAACTATATTGAAGCAGCTGAAACAGCGAAAATATTGGTCAGTGGCCAGAGGAGCTGAGGTCGAAGTGGAACCCTGCTGTATTTGTCAGGAGGAATATGGAGATGGAGAAGATATTGGGACTCTGGAATGTGGTCATGATTTCCATTATGGCTGTATTAAACAGTGGCTGATGCACAAGAACTTGTGCCCCATTTGTAAAACAACTGCCCTGGGTATATGA 2205 0.4449 MQGQKGAIGSLPETLNFDHGSTSSGAGLDQQLCWNNMRNPAENRLADYMQPPSDTNLAFLNSISHGGQNLSGWSLGEPSSINTQNIVSCDECKTEHGWATSVSGCAGAGPRLEEHRCEPSNVLSLDNVNVNPSSNQIVNGPLFLQSSSSDAIAQNLNLNAGFVGSGGDDRQGLECPNLYKSSGSENLPSASSSSDPFGPRILSGGYLVEENDGRAGSSLEGRRLSCKRKALEGNIGQSSVGGSSSSFQRTENNVWHAVVPARYNAGNGLSISSPSGNIIGASPAEQVNPRLGLGVRGVATDSLPVLNVPGSAESSHRNFRMRINPSHQQDSVPHNLFSAGGSVRHSNVSSHQQSTRLIPVNHAPDLRSTPAADNASSQSQSVVNHAPNLPRTMQSFRWSGASSSRHGNSSSPLISGERDAAPREESSSRSMPRNTLEHSMFLPAIDLRSLPQNPTNRNLAGGNMTTPGNSASTSRTGSSSGVNSSSAPTWGPPRDPPSQYSRRLSEYVRRSLFSSVGADSGGQSSNYSPLHSGPSPSSQEVAPSSGAGNQGHHQSYPRSALLMERHGDGVLGIPYSLRTLAAASEGRSRLVSEIRNVLDLMRRGEDLRFEDVMILDQSVFFGVADIHDRHRDMRLDVDNMSYEELLALEERIGDVCTGLSEETILKQLKQRKYWSVARGAEVEVEPCCICQEEYGDGEDIGTLECGHDFHYGCIKQWLMHKNLCPICKTTALGI* 735
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0834 734 MobiDBLite consensus disorder prediction 326 359 - -
Vvi18g0834 734 MobiDBLite consensus disorder prediction 1 22 - -
Vvi18g0834 734 MobiDBLite consensus disorder prediction 370 415 - -
Vvi18g0834 734 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 660 732 IPR013083 -
Vvi18g0834 734 MobiDBLite consensus disorder prediction 515 555 - -
Vvi18g0834 734 MobiDBLite consensus disorder prediction 326 435 - -
Vvi18g0834 734 ProSiteProfiles Zinc finger RING-type profile. 687 728 IPR001841 -
Vvi18g0834 734 MobiDBLite consensus disorder prediction 448 501 - -
Vvi18g0834 734 MobiDBLite consensus disorder prediction 177 198 - -
Vvi18g0834 734 MobiDBLite consensus disorder prediction 516 555 - -
Vvi18g0834 734 MobiDBLite consensus disorder prediction 173 198 - -
Vvi18g0834 734 SMART ring_2 687 727 IPR001841 -
Vvi18g0834 734 MobiDBLite consensus disorder prediction 449 489 - -
Vvi18g0834 734 Pfam Ring finger domain 687 728 IPR001841 -
Vvi18g0834 734 FunFam E3 ubiquitin-protein ligase MBR2 654 732 - -
Vvi18g0834 734 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 155 732 IPR045191 GO:0061630
Vvi18g0834 734 SUPERFAMILY RING/U-box 667 730 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0834 Vvi-Chr18 8599921 8604684 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0834 35 732 C3H Transcription Factor Family AT2G15530 37.483 2.79e-99 320
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0834 - - vvi:100267740 1442.17