Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0833 ATGGGAGATCAAAATAATTCGCAAACGACGCCGTTTCAGCTACCGCCTGGTTGCAGATTCCATCCTTCTGAAGAACAGCTCATCCGCTACTACCTCACCGGCAAGAACACCACCGGCGCTCTCTCTTCTTCCGATCACAATGTCTTTGGTTTCAATGCGATCGGAGAGCTTGATTTGTACGGTTACGAGCCTTTCAATTTGCCTGATACAGCGTGCTTTGGGTTCGGCCATGGAGGAAGGAGGAGGCATTGGTATTGTTACACGGCTAGGGTTTTGAAGGAGAAAGGAAGGAGGAAGGCTGGGGGTGGGTTTTGGAAGAGGACGGGTAGGGTTAGGGATGTGGTGGTTGGGAAAGACAAGGTTACGCTGGGGAGGAGGACGACTTTCGCCTTTTATTTGGGCAATTCATCGAAAAGCGCGGTGAGGACCGATTGGGTCATGTTTGAATATGCCCTAGTCGATCACCTCAAGGCTTCTTTTGTCCTATGCCGAGTATTTGTCAAATCTCCAAGTGGAAACAATGCATCAGACCATGTTATAAGTTCTTGTGGTGAAGAAAGTGTTTCAGCAGTACGTCATGTTGGTATTCAGCATGATGGAACCGCAACATCTGACATTGTTGAAGCTAACGTGCATGGTGACAACTCTGTTGACACAAAAAATGAGATCCCTAAGATTTCAGCAAGATTGCTTAGTGAGCTAGATGATCAAGTTATGACTCACCGGGGGTTTGTTGCCGACTTTAACTTTCCCTTGGGTATTCAGGCACATAATCCTGTGATGTCAACCAGTGGTAGCACAAGGTTTGTAGATGGTACGACTCAAGGGTTAATGTCCATTCTAGAGGAAGATTTCATAGAGTTGGATGATCTTGTTTACCCACTTTTGGGCATTGATCAGTCACGATAG 909 0.4664 MGDQNNSQTTPFQLPPGCRFHPSEEQLIRYYLTGKNTTGALSSSDHNVFGFNAIGELDLYGYEPFNLPDTACFGFGHGGRRRHWYCYTARVLKEKGRRKAGGGFWKRTGRVRDVVVGKDKVTLGRRTTFAFYLGNSSKSAVRTDWVMFEYALVDHLKASFVLCRVFVKSPSGNNASDHVISSCGEESVSAVRHVGIQHDGTATSDIVEANVHGDNSVDTKNEIPKISARLLSELDDQVMTHRGFVADFNFPLGIQAHNPVMSTSGSTRFVDGTTQGLMSILEEDFIELDDLVYPLLGIDQSR* 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0833 302 Pfam No apical meristem (NAM) protein 15 152 IPR003441 GO:0003677|GO:0006355
Vvi18g0833 302 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 14 181 - -
Vvi18g0833 302 SUPERFAMILY NAC domain 9 168 IPR036093 GO:0003677|GO:0006355
Vvi18g0833 302 ProSiteProfiles NAC domain profile. 14 168 IPR003441 GO:0003677|GO:0006355
Vvi18g0833 302 Gene3D NAC domain 23 171 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0833 Vvi-Chr18 8591160 8595572 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0833 1 186 NAC Transcription Factor Family AT3G15500 30.964 2.41e-24 98.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vvi18g0833 NAM 5.3e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0833 - - vvi:100262577 602.053