Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0830 ATGCCCATTTCAACTTTGGCTTCAGCTCTTGCAAATGCAACACCTGATCAGCAAAGAACAATGCTGAGCGAAAGTTTGTACCCTCTCGTGGATCAGCTGGAGCATGAGATGGCAGCCAAACTGACAGGCATGCTTCTGGAGATGGGACAGACTGAGTTTTTGCATCTGCTCGAGTCGCCAGAGGCTTTGAAGTCCAAGGTTGCGGAGGCCATGGACGTCCTGAGGAATGTTGCTCAGCAGCAGGCTAACAGCCCAACCGAACAACTATCCTCACTGTCCCTGAATGATAGCCTTGTTCCCTGA 303 0.5116 MPISTLASALANATPDQQRTMLSESLYPLVDQLEHEMAAKLTGMLLEMGQTEFLHLLESPEALKSKVAEAMDVLRNVAQQQANSPTEQLSSLSLNDSLVP* 101
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0830 100 MobiDBLite consensus disorder prediction 79 100 - -
Vvi18g0830 100 Gene3D - 1 81 - -
Vvi18g0830 100 Pfam Poly-adenylate binding protein, unique domain 10 74 IPR002004 GO:0003723
Vvi18g0830 100 SUPERFAMILY PABC (PABP) domain 3 92 IPR036053 GO:0003723
Vvi18g0830 100 SMART poly_2 14 77 IPR002004 GO:0003723
Vvi18g0830 100 FunFam Polyadenylate-binding protein 1 80 - -
Vvi18g0830 100 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UBR5 16 87 - -
Vvi18g0830 100 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 2 79 IPR002004 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0830 Vvi-Chr18 8562593 8563092 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0830 1 100 Eukaryotic Initiation Factors Gene Family AT1G49760 73.000 1.84e-42 144
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0830 K13126 - vvi:109121673 180.259