Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0829 ATGTTTTCCATGACAGGCATGCTTCTGGAGATGGACCAGACTGAGGTTTTGCATCTGCTCGAGTCGCCAGAGGCTTTGAAGTCCAAGGTTGCGGAGGCCATGGACGTCCTGAGGAATGTTGCTCAGCAGCAGGCTAACAGCCCAACCGAACAACTAGCCTCACTGTCCCTAAATGACAGCCTTGTTCCCTGA 192 0.5312 MFSMTGMLLEMDQTEVLHLLESPEALKSKVAEAMDVLRNVAQQQANSPTEQLASLSLNDSLVP* 64
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0829 63 MobiDBLite consensus disorder prediction 42 63 - -
Vvi18g0829 63 Gene3D - 3 56 - -
Vvi18g0829 63 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 1 42 IPR002004 GO:0003723
Vvi18g0829 63 SUPERFAMILY PABC (PABP) domain 4 56 IPR036053 GO:0003723
Vvi18g0829 63 Pfam Poly-adenylate binding protein, unique domain 5 37 IPR002004 GO:0003723
Vvi18g0829 63 SMART poly_2 1 40 IPR002004 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0829 Vvi-Chr18 8544586 8547554 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0829 4 63 Eukaryotic Initiation Factors Gene Family AT1G49760 80.000 1.70e-26 97.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0829 K13126 - vvi:109121673 114.005