Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0827 ATGAACAGGAAATCAGTTGCTGCTTGGCCGTCAATAACAGAACAAGATTGGACCCGCCCTTGCCGGAGAACTACTTCGGGAACTCCATTCATACAGCCAATGCCCATTTCAGCTTTGGCTTCAGCTCTTGCAAATGCAACACCTGATCAGCAAAGAACAATGCTGGGCGAAAGTTTGTACCCTCTCGTGGATCAGCTGGAGCATGAGATGGCAGCCAAAGTGACAGGCATGCTTCTGGATATGGGCCAGACTGAGTTTTTGCATCTGCTCGAGTCGCCAGAGGCTTTGAAGTCCAAGGTTGCGGAGGCCATGGACGTCCTGAGGAATGTTGCTCAGCAGCAGGCTAACAGACCGAACAACTATCCTCACTGTCCCTGA 378 0.5132 MNRKSVAAWPSITEQDWTRPCRRTTSGTPFIQPMPISALASALANATPDQQRTMLGESLYPLVDQLEHEMAAKVTGMLLDMGQTEFLHLLESPEALKSKVAEAMDVLRNVAQQQANRPNNYPHCP* 126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0827 125 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UBR5 45 116 - -
Vvi18g0827 125 FunFam Polyadenylate-binding protein 31 113 - -
Vvi18g0827 125 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 35 112 IPR002004 GO:0003723
Vvi18g0827 125 SMART poly_2 47 110 IPR002004 GO:0003723
Vvi18g0827 125 Pfam Poly-adenylate binding protein, unique domain 43 107 IPR002004 GO:0003723
Vvi18g0827 125 SUPERFAMILY PABC (PABP) domain 27 117 IPR036053 GO:0003723
Vvi18g0827 125 Gene3D - 31 114 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0827 Vvi-Chr18 8537469 8538046 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0827 3 116 Eukaryotic Initiation Factors Gene Family AT1G49760 61.667 4.79e-39 136
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0827 K13126 - vvi:100255846 160.999