Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0826 ATGGCAACTCCGACTGTTCGGCTCATCTCAGAATGCTTTATCAAACCAAAGTTCACTTCAGAAGAGACCAAGGAGCCCTGTTACCTCACACCATGGGACCTTGCCATGCTCTCCGTCAATTATATCCAAAAGGGCCTTCTCTTTAGCAAACCACCTGATGTGGATGATCCACAAAACTTCATGGCAACTCTCTTGGACAGGCTCAAGGATTCCCTCGCTCTCACACTCGACCATTTCTACCCACTTGCAGGCCGCCTTGCAACAAAGAAGGAGGACAGTCCACCCTCTTACGTGGTCTTTGTAGATTGTAACAACAGTCCCGGAGCGAAATTCATCCACGCAGCTGCAGACATGACAATATCTGATATCCTTTCACCAATTTATGTACCCCAAGTTATCCAATCATTCTTTGATCATGATAGGGTGATTAACCACGATGGTCACACCTTGTCTTTGCTATCAATTCAAGTCACAGAGCTTGTGGACGGCATCTTCATTGGATGTTCCATAAATCACAGCATGGTTGATGGAACCTCTTTCTGGCATTTCTTCAACGCATGGTCTGAGGTATTCACTGCACAGGAGAAGAATAGTCCCATAACACTGTCACGCCCACCCATCCTCAAGCGCTGGTTTCCTGATGGCTATGGTCCAATTATCAACCTTCCTTTCACTCACCATGATGAGTTCATCAGCAGATTTGAAGCACCCGTACTCAGAGAGAGAATTTTCCACTTCTCATCAGAATCAATAGCAAAGCTCAAAGCAAAGGCAAATGCACAGTGCAACAGCAACAAAATCTCCTCTTTCCAGGCATTGTCCGCACTTGTCTGGAGGTCCATAACACGAGCGCGCTGTTTCCCACATGAGCAGGTAACCAGTTGCAGGCTGGCCATCGGTAACAGAACAAGATTGGACCCGCCCTTGCCGGAGAACTACTTTGGGAACTCAATTCAAACGGTGAGAGGCATTGCCACTGCTGGTGAACTGCTTGAACATGATCTTGGGTGGGCAGCCTGGCTCTTGCACCAGGCTGTGGTCGGTCACACTGACAAAGCTGTGCGTGGCTGGCTTGAGTCATGGTTTCAATCCCACTTTATTTATCAGTTAGGCCTGTTTTTTGACCCCAATAGCGTAATGATGGGGAGCTCGCCCAGATTTAACAAGTATGGAATTGAGTTTGGACTAGGGAAAGGATTGGCAGTTCGGAGCGGTTACGCACACAAGTTCGATGGGACAGTGTCATGTTACCCGGGACGTGAAGGAGGAGGAAGCATAGATTTGGAGGTGTGCCTACCGCCAAACTCGATGAGTGCTCTTGAATCCAACCAGGAGTTCATGGAGGCTGTCTCTTTGTCCCCTTAG 1365 0.4828 MATPTVRLISECFIKPKFTSEETKEPCYLTPWDLAMLSVNYIQKGLLFSKPPDVDDPQNFMATLLDRLKDSLALTLDHFYPLAGRLATKKEDSPPSYVVFVDCNNSPGAKFIHAAADMTISDILSPIYVPQVIQSFFDHDRVINHDGHTLSLLSIQVTELVDGIFIGCSINHSMVDGTSFWHFFNAWSEVFTAQEKNSPITLSRPPILKRWFPDGYGPIINLPFTHHDEFISRFEAPVLRERIFHFSSESIAKLKAKANAQCNSNKISSFQALSALVWRSITRARCFPHEQVTSCRLAIGNRTRLDPPLPENYFGNSIQTVRGIATAGELLEHDLGWAAWLLHQAVVGHTDKAVRGWLESWFQSHFIYQLGLFFDPNSVMMGSSPRFNKYGIEFGLGKGLAVRSGYAHKFDGTVSCYPGREGGGSIDLEVCLPPNSMSALESNQEFMEAVSLSP* 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0826 454 Gene3D - 1 218 IPR023213 -
Vvi18g0826 454 Gene3D - 231 443 IPR023213 -
Vvi18g0826 454 PANTHER FAMILY REGULATORY PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G14730)-RELATED 8 448 - -
Vvi18g0826 454 FunFam Tryptamine hydroxycinnamoyl transferase 226 444 - -
Vvi18g0826 454 Pfam Transferase family 7 447 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0826 Vvi-Chr18 8533204 8534568 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0826 68 441 Monolignol Biosynthesis Gene Families AT5G48930 28.571 8.97e-33 127
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0826 - - vvi:100260914 937.562