Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0825 ATGGCGCAGATTCAGGCCGCAGTAGCAGGTCCCAATGGAGTGGCGAATACAGCATCGCTATATGTGGGAGACCTTGACGTCAACATCACGGATTCGCAGCTTTACGATCTGTTTATCCAGGCCGGCCAAGTGCTGTCCGTACGGGTGTGTAGAGACTTGAGCACCCGGAGATCTCTCGGCTACGGCTACGTCAACTATAGCAACCCTCAAGATGCGGCAAGGGCATTGGATCTACTGAACTTCACTCCACTCAATGGCAAGCCCATCAGAATTATGTACTCTCATCGGGACCCTAGTATTCGTAAAAGTGGAACTGCCAATATATTTATTAAGAATCTGGACAAGTCAATCGACAACAAAGCACTCCATGATACTTTTTCTGCTTTCGGAAACATTCTTTCTTGCAAGATAGCTACTGATCCTTCTGGCCAGTCCAAAGGCTATGGTTTTGTACAATTTGATAATGAAGAATCTGCGCAAAATGCTATAGATAAGTTGAATGGCATGCTGATTAATGACAAACAAGTGTATGTTGGACAATTTCTTCGGAAGCAGGAGAGAGAAACTGCTTTGAATAAGACAAAATTTAATAATGTTTATGTGAAAAATCTCTCAGAATCAACAACAGAAGAAGATCTGAAGAATATTTTTGGAGAATTTGGAATAATTACTAGTGTTGTTGTAATGAGGGATGGAGATGGAAAATCAAAATGTTTTGGATTTGTTAACTTTGAGAATGCAGATGATGCTGCTGAAGCAGTTGAGGCTCTTAATGGGAAGAAATTTGATGAGAAAGAATGGTATGTTGGGAAAGCCCAGAAAAAATATGAAAGAGAGCTTGAACTGAAAGGGCGATTTGAGCAGAGTATGAAGGAAGTAGTAGACAAATTTCAAGGGGTGAACTTGTATATTAAAAACTTGGACGATAGCATTGGCGATGATAAACTAAAGGAATTGTTCTCAGAGTTTGGTACAATTACCTCATGCAAGGTTATGCGTGACCCAAGTGGAATAAGTAGAGGCTCGGGATTTGTTGCCTTCTCAACTTCTGAAGAAGCATCTCGAGCACTCACGGAGATGAATGGTAAAATGGTTGTGAGCAAACCTCTTTATGTTGCCCTTGCACAGAGGAAAGAAGAGAGGAGAGCCAGGTTGCAGGCACAGTTCTCTCAAATGAGGCCCGTCTCGATGGCACCTTCAGTTGCACCTCGGATGCCAATGTACCCTCCTGGTGCTCCCGGTCTTGGGCAGCAATTATTTTATGGGCAAGGGCCACCTGCTATAATTCCTCCCCAAGCTGGATTCGGTTACCAGCAGCAACTCGTTCCTGGAATGAGGCCTGGTGGTGCTCCCATGCCAAATTTCTTTGTTCCACTGGTCCAGCAAGGTCAGCAGGGTCAACGCCCAGGGGGCAGACGTGGGGCAGGTCCTGTGCAGCAGAATCAGCAGCCAGTGCCCCTGATGCAGCAGCAGATGCTTCCAAGGGGGGGACGAGTCTACCGCTACCCTCCTGGCCGCAATATGCCTGATGTTCCAATGCCAGGTGTTGCTGGAGGCATGCTTTCAATTCCATATGACATGGGTGGCGTGCCACTTCGAGATGCTGCAATTGGTCAGCCAATGCCCATTTCAGCTTTGGCTTCAGCTCTTGCAAATGCAACACCTGATCAGCAAAGAACAATGCTGGGTGAAAGTTTGTACCCTCTCGTGGATCAGCTGGAGCATGAGATGGCAGCTAAAGTGACAGGCATGCTTCTGGAGATGGACCAGACTGAGGTTTTGCATCTGCTCGAGTCGCCAGAGGCTTTGAAGTCCAAGGTTGCGGAGGCCATGGACGTCCTGAGGAATGTTGCTCAGCAGCAGGCTAACAGCCCAACCGAACAACTAGCCTCACTGTCCCTAAATGACAGCCTTGTTCCCTGA 1923 0.4691 MAQIQAAVAGPNGVANTASLYVGDLDVNITDSQLYDLFIQAGQVLSVRVCRDLSTRRSLGYGYVNYSNPQDAARALDLLNFTPLNGKPIRIMYSHRDPSIRKSGTANIFIKNLDKSIDNKALHDTFSAFGNILSCKIATDPSGQSKGYGFVQFDNEESAQNAIDKLNGMLINDKQVYVGQFLRKQERETALNKTKFNNVYVKNLSESTTEEDLKNIFGEFGIITSVVVMRDGDGKSKCFGFVNFENADDAAEAVEALNGKKFDEKEWYVGKAQKKYERELELKGRFEQSMKEVVDKFQGVNLYIKNLDDSIGDDKLKELFSEFGTITSCKVMRDPSGISRGSGFVAFSTSEEASRALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMRPVSMAPSVAPRMPMYPPGAPGLGQQLFYGQGPPAIIPPQAGFGYQQQLVPGMRPGGAPMPNFFVPLVQQGQQGQRPGGRRGAGPVQQNQQPVPLMQQQMLPRGGRVYRYPPGRNMPDVPMPGVAGGMLSIPYDMGGVPLRDAAIGQPMPISALASALANATPDQQRTMLGESLYPLVDQLEHEMAAKVTGMLLEMDQTEVLHLLESPEALKSKVAEAMDVLRNVAQQQANSPTEQLASLSLNDSLVP* 641
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0825 640 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 542 619 IPR002004 GO:0003723
Vvi18g0825 640 SUPERFAMILY RNA-binding domain, RBD 18 187 IPR035979 GO:0003676
Vvi18g0825 640 Gene3D - 100 191 IPR012677 -
Vvi18g0825 640 SMART rrm2_1 107 179 IPR003954 GO:0003676
Vvi18g0825 640 SMART rrm2_1 301 373 IPR003954 GO:0003676
Vvi18g0825 640 SMART rrm2_1 19 92 IPR003954 GO:0003676
Vvi18g0825 640 SMART rrm2_1 198 270 IPR003954 GO:0003676
Vvi18g0825 640 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 108 176 IPR000504 GO:0003723
Vvi18g0825 640 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 20 90 IPR000504 GO:0003723
Vvi18g0825 640 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 302 370 IPR000504 GO:0003723
Vvi18g0825 640 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 199 267 IPR000504 GO:0003723
Vvi18g0825 640 Pfam Poly-adenylate binding protein, unique domain 550 614 IPR002004 GO:0003723
Vvi18g0825 640 NCBIfam polyadenylate binding protein, human types 1, 2, 3, 4 family 18 615 IPR006515 GO:0003723
Vvi18g0825 640 Gene3D - 297 399 IPR012677 -
Vvi18g0825 640 SMART rrm1_1 198 270 IPR000504 GO:0003723
Vvi18g0825 640 SMART rrm1_1 301 373 IPR000504 GO:0003723
Vvi18g0825 640 SMART rrm1_1 107 179 IPR000504 GO:0003723
Vvi18g0825 640 SMART rrm1_1 19 92 IPR000504 GO:0003723
Vvi18g0825 640 CDD RRM2_I_PABPs 104 179 IPR045305 -
Vvi18g0825 640 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 300 377 IPR000504 GO:0003723
Vvi18g0825 640 CDD RRM3_I_PABPs 196 275 - -
Vvi18g0825 640 FunFam Polyadenylate-binding protein 104 187 - -
Vvi18g0825 640 Gene3D - 538 621 - -
Vvi18g0825 640 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 106 178 IPR000504 GO:0003723
Vvi18g0825 640 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 18 96 IPR000504 GO:0003723
Vvi18g0825 640 MobiDBLite consensus disorder prediction 619 640 - -
Vvi18g0825 640 Gene3D - 3 99 IPR012677 -
Vvi18g0825 640 CDD RRM1_I_PABPs 19 98 IPR034364 -
Vvi18g0825 640 FunFam Polyadenylate-binding protein 188 282 - -
Vvi18g0825 640 SUPERFAMILY RNA-binding domain, RBD 197 381 IPR035979 GO:0003676
Vvi18g0825 640 PANTHER RNA BINDING PROTEIN 18 80 - -
Vvi18g0825 640 FunFam Polyadenylate-binding protein 538 620 - -
Vvi18g0825 640 SMART poly_2 554 617 IPR002004 GO:0003723
Vvi18g0825 640 FunFam Polyadenylate-binding protein 4 103 - -
Vvi18g0825 640 SUPERFAMILY PABC (PABP) domain 486 633 IPR036053 GO:0003723
Vvi18g0825 640 Gene3D - 192 296 IPR012677 -
Vvi18g0825 640 FunFam Polyadenylate-binding protein 283 388 - -
Vvi18g0825 640 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 197 274 IPR000504 GO:0003723
Vvi18g0825 640 CDD RRM4_I_PABPs 299 377 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0825 Vvi-Chr18 8518635 8531275 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0825 17 640 Eukaryotic Initiation Factors Gene Family AT1G49760 72.397 0.0 892
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0825 K13126 - vvi:100255846 1221.45