Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0824 ATGGGAAGCATGAAGGTGCATCAGTTCGCACGTGGATTCTGGGAGCACGAACCCTCCCTCACGCTTGGCTGCAAGCGTTTACGCCCTCTTGCTCCCAAGCTGGCCAACAGTGACAGTGTCGCTGCTTTCGATCTCAAGAGCTTCATTAGACCTGAAAGTGGCCCCAGGAAGCTTGGATGCTCTGATGATAAGAGAGATTCACCTCAGGTGGAAACACATCCAGGTGGGACGCGGTGGAATCCAACCCAGGAACAGATTGGGATCTTGGAGATGCTGTATAAAAGTGGAATGCGCACTCCCAATGCACAGCAAATAGAACAAATCACTGCACAGCTTGGAAAGTACGGGAAGATCGAAGGCAAGAATGTGTTTTATTGGTTCCAAAACCACAAAGCACGGGAGAGACAGAAGCAGAAGCGCAACAGTTTGGGTCTCGGCCACTGTCCCAGGACTCCCACATCCATAACTACAATAACCTTGGATACCAGGGTGGAAGTGGGAAGAGAAGAAGATAGTCCAAACAAGAGAAAGTGTAAGAGCTGGACGTTTGAAACGGTGGAAGAAAATAACAGATACTACAGAGAGGAGGGAGATAAGACTCTGGAGCTTTTCCCGTTGCACCCGGAAGGCAGATGA 636 0.4984 MGSMKVHQFARGFWEHEPSLTLGCKRLRPLAPKLANSDSVAAFDLKSFIRPESGPRKLGCSDDKRDSPQVETHPGGTRWNPTQEQIGILEMLYKSGMRTPNAQQIEQITAQLGKYGKIEGKNVFYWFQNHKARERQKQKRNSLGLGHCPRTPTSITTITLDTRVEVGREEDSPNKRKCKSWTFETVEENNRYYREEGDKTLELFPLHPEGR* 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0824 211 SUPERFAMILY Homeodomain-like 72 142 IPR009057 -
Vvi18g0824 211 CDD homeodomain 77 138 IPR001356 GO:0003677
Vvi18g0824 211 Pfam Homeodomain 77 136 IPR001356 GO:0003677
Vvi18g0824 211 MobiDBLite consensus disorder prediction 54 80 - -
Vvi18g0824 211 SMART HOX_1 74 141 IPR001356 GO:0003677
Vvi18g0824 211 MobiDBLite consensus disorder prediction 56 71 - -
Vvi18g0824 211 Gene3D - 77 142 - -
Vvi18g0824 211 FunFam WUSCHEL-related homeobox 4 76 143 - -
Vvi18g0824 211 ProSiteProfiles 'Homeobox' domain profile. 72 137 IPR001356 GO:0003677
Vvi18g0824 211 PANTHER WUSCHEL-RELATED HOMEOBOX 4 4 211 IPR044186 GO:0003700|GO:0010067|GO:0010087|GO:0051301
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0824 Vvi-Chr18 8514178 8515333 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0824 4 164 Wox Gene Family AT1G46480 62.295 8.68e-68 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Vvi18g0824 Homeodomain 2.2e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0824 - - vvi:100250666 431.024