Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0823 ATGAGAAAACTCCAAATACCCTTTCAGACTCACAAACAAAGAGAGAAGGGGGATGAGATAGGGGACGATGGATTATGTCGGCCAGTGTTGGATTTATCTTTAAGGAAGATCAACGTGGCGGCCTCCCCACTCGACAGAATAGCAGCCAACTTTGGGGCTGTTTGGGGCACAGAACAAAGGTCGGTTGTGATGATGGAAGGCAAGTGTTGTGCGACCACAGAGAAGCGGAAGCAGAGGCAGCAACAAGAGAAGCCTTACAGAGGTATAAGGATGAGGAAGTGGGGTAAGTGGGTGGCTGAGATTAGAGAACCCAACAAGAGGTCCAGGATATGGCTTGGTTCATACTCCACACCGAAAGCCGCTGCCCGTGCCTATGACACCGCCGTCTTCTGTCTCCGGGGCCGCTCTGCTCGCCTCAACTTCCCGGAGTATATAGCGGAAGAAGATGAGGTTCAGGACTTATCCGCCGCATCCATACGAAAGAAAGCCACCGAAGTCGGAGCTAGGGTTGACGCCATGGAGACCGCCCTCCACGCATCAGAACCCAATTCTAGCAGAGTCTCCGACAAACCCGACTTGAACGAGTACCCTAGCCCAGAAAGTTCAGATGATGATTGA 618 0.5227 MRKLQIPFQTHKQREKGDEIGDDGLCRPVLDLSLRKINVAASPLDRIAANFGAVWGTEQRSVVMMEGKCCATTEKRKQRQQQEKPYRGIRMRKWGKWVAEIREPNKRSRIWLGSYSTPKAAARAYDTAVFCLRGRSARLNFPEYIAEEDEVQDLSAASIRKKATEVGARVDAMETALHASEPNSSRVSDKPDLNEYPSPESSDDD* 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0823 205 ProSiteProfiles AP2/ERF domain profile. 85 142 IPR001471 GO:0003700|GO:0006355
Vvi18g0823 205 SUPERFAMILY DNA-binding domain 85 143 IPR016177 GO:0003677
Vvi18g0823 205 PRINTS Ethylene responsive element binding protein signature 124 144 IPR001471 GO:0003700|GO:0006355
Vvi18g0823 205 PRINTS Ethylene responsive element binding protein signature 86 97 IPR001471 GO:0003700|GO:0006355
Vvi18g0823 205 FunFam Ethylene-responsive transcription factor 2 84 143 - -
Vvi18g0823 205 MobiDBLite consensus disorder prediction 1 20 - -
Vvi18g0823 205 Pfam AP2 domain 86 134 IPR001471 GO:0003700|GO:0006355
Vvi18g0823 205 Gene3D AP2/ERF domain 85 144 IPR036955 GO:0003700|GO:0006355
Vvi18g0823 205 SMART rav1_2 85 148 IPR001471 GO:0003700|GO:0006355
Vvi18g0823 205 MobiDBLite consensus disorder prediction 172 205 - -
Vvi18g0823 205 CDD AP2 86 143 IPR001471 GO:0003700|GO:0006355
Vvi18g0823 205 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 68 204 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0823 Vvi-Chr18 8500711 8501451 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0823 65 205 AP2-EREBP Transcription Factor Family AT5G67190 50.556 1.60e-49 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vvi18g0823 AP2 6.7e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0823 K09286 - vvi:100245542 405.601