Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0822 ATGTTGAAGGATGAGGGAGGAGTGATTGTGATGATGAATTCTCTTCCTCCTTTCTGCAATGCCAAACTCACCCTTATTCCTCTCACTTCTCCCTCATCTCTTTTCCTCCGCAAAACCAAATATTCTCTTTCTCTAAATACCGAAACTGGGATTTCCCTAATATCAGTAAAACCCTCACAAAACCTCAACCCCTCCAAATGGCGAATCAATGTCCGAGCCAGTGCTGCAGACGAAATCGACATGGTTCGAAACAAAGATGGCGTCTACACAGCCAAGCGGAAGAAGGTGGTGGTTCTCTGGGATCTTGATAACAAGCCCCCTCGTGGCCCGCCGTATGCGGCGGCGACGGCACTGATAGAATTGGCGCAGCGGTTCGGCGATATTGTCGACATCTCCGCCTACGCCAACCGCCATGCCTTCGTGCACCTACCCCAGTGGGTCCTCGAGGAACGCCACGAACGACGCCGCATGGACTTCCTCGAACGCAAGGGCATAACGACGCCGGCTGAGCCCTATATCTGCGGCGTCTGCGGCCGCAAATGCCGAACCAACTTGGACCTCAAAAAGCACTTCAAGCAGCTCCACGAGCGCGAGCGCCAGAAGAAGCTAAATCGGATGAGGTCGCTCAAGGGTAAGAAACGACAGCGTTATAAGGAGAAGTTCATTTCTGGGAATACTAAGTATGAGGAGGCAGCGAGGTCTTTAATCACTCCAAAGGTTGGGTATGGACTGGCTTCGGAGTTGAGGCGTGCCGGAGTTTTTGTGAAGACGGTGGAGGATAAGCCCCAGGCGGCAGATTGGGCGTTGAAGAGGCAAATGCAGCATTCCATGAGTCGAGGAATTGATTGGTTGGTTTTGGTATCAGATGATTCAGACTTTGCGGATATGTTGAGGAGGGCCAGGGAGTCGAATTTGGGGACAGTGGTTGTTGGGGATTGGCACAGGGCATTGGGGCGCCATGCAGATTTGTGGGTTCCCTGGACTGGGGTTGAAAATAGGGAGGTTACGGAGGAGGATTTGAGGCCTAGGAATAGGAGGAGAAGTGATTTCGAGGATAGGGATGATGGTTTGTTTTCAGTCACCCATTTTAATGGAGATGGCATTGGTGGGGGCATTTTGGATGGTTTAGTGGATGAGCTTGTCGTGAATAGGTCCGAGTGTAATGGTGTCAATATATCAGCTTTTTCTGAAGGGGAAGAAGATTGGATAGGAGAGGAATTAGACAAGAGGGGCCGTGTTCAGTTCCAAGCTGGCCAATCTCTTGATGAGGATGATGATTATATCTTATGGGATAGTGAGGATGAGGAAGCAGAGGAGGAAGATGGGTATTTGTGA 1335 0.5056 MLKDEGGVIVMMNSLPPFCNAKLTLIPLTSPSSLFLRKTKYSLSLNTETGISLISVKPSQNLNPSKWRINVRASAADEIDMVRNKDGVYTAKRKKVVVLWDLDNKPPRGPPYAAATALIELAQRFGDIVDISAYANRHAFVHLPQWVLEERHERRRMDFLERKGITTPAEPYICGVCGRKCRTNLDLKKHFKQLHERERQKKLNRMRSLKGKKRQRYKEKFISGNTKYEEAARSLITPKVGYGLASELRRAGVFVKTVEDKPQAADWALKRQMQHSMSRGIDWLVLVSDDSDFADMLRRARESNLGTVVVGDWHRALGRHADLWVPWTGVENREVTEEDLRPRNRRRSDFEDRDDGLFSVTHFNGDGIGGGILDGLVDELVVNRSECNGVNISAFSEGEEDWIGEELDKRGRVQFQAGQSLDEDDDYILWDSEDEEAEEEDGYL* 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0822 444 ProSiteProfiles Zinc finger C2H2 type domain profile. 172 200 IPR013087 -
Vvi18g0822 444 CDD PIN_LabA-like 182 312 - -
Vvi18g0822 444 Gene3D - 88 328 - -
Vvi18g0822 444 Coils Coil 192 212 - -
Vvi18g0822 444 ProSitePatterns Zinc finger C2H2 type domain signature. 174 195 IPR013087 -
Vvi18g0822 444 PANTHER C2H2-TYPE DOMAIN-CONTAINING PROTEIN 61 400 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0822 Vvi-Chr18 8481341 8482675 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0822 18 408 C2H2 Transcription Factor Family AT5G52010 59.799 1.87e-165 469
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vvi18g0822 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0822 - - vvi:100248940 851.662