Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0816 ATGCTCAATACTACACAGTCTCTTGCTCCGTGCTTGTTTATTCTCTCGGTCGCTTTTTTGACTGCTTCTTCCACTGCTGCCACTCATCCACCGCATGCTGTTTCGCCCTCGCCCTCGCCCACGCTACCACCATCTGATGCCATTGCCCTTGTCATGTTCAAATCCAAAGCCGACTTGGGTAACAAGCTTCGCTTCACTGCAAGCACCAGTCTCAATTACTGCTATTGGCAAGGAGTCACATGCCTCCGAGGGAAAGTGGTGCGCCTAGTTCTGGAAGGGCTCGATCTCGGTGGGGTTTTTGGTCCTGACACATTGAGTCGTCTTGACCAACTTAGAGTCCTCAGTTTGCAGAACAACTCGCTCGTTGGACCCATTCCAGATCTCTCCAAATTCTTCAATCTCAAGGCTCTGTTTCTTGATCACAACTCGTTCACGGGCTCTTTTCCACCTTCAATCTCGTCGCTTCATCGGCTTCGAACCCTTGATTTCTCTTACAATAATCTGACCGGCCCTTTACCTATTTGGTTAACAAAACTAGATCGGCTATACTACCTGCGACTTGAGTCGAACCGGTTCAACGGAACGATTCCTCCACTCAACCAGTCCACTCTCCAAACGTTTAATGTTTCGCGTAATAACCTCTTCGGTGCCATACCCGTGACACCTACTTTGTTGCACTTTGAAGCGTCTGCGTTCGCATTGAACCCTGGTCTCTGCGGTGAGATTCTTCACAAGGAGTGCCACCCGAGTCAACCCTTTTTTAGTCCATCAGCGCCGGTCGCCACGCCACCACCGCCAGTGGGTCTTGGGCAAAACGAGCAGGTGCACGGTGTTGAGTTGGCTCAACCGTGTCCGAAGAATCATAAGAGAACCGTGGTGATCCTGGGCTTCTCATCTGGGGTGTTCGTTCTGATTAGTTCACTTCTTTGTTTTGTGATAGCAATGAAGAGACAGCGAAACCAGAGGAACACAGCGCCGACGATGGCTTCTGACTCTGCAGCAACAGCCCAGGCTGCGGCCGTGATGAGAATAGAAGAAGAGAACGAGTTGGAGGAGAAGGTGAAGAAGGTACAGGGAATGCAAGTGGCGAAGAGTGGGAGTTTAGTATTTTGTGCAGGGGAGGCGCAGCTGTATACTCTGGAACAGCTGATGAGGGCTTCAGCTGAGTTGCTGGGGAGAGGAAGCATAGGGACCACTTACAAAGCGGTGTTGGATAACCGTCTGATCGTCAGCGTGAAGAGACTCGACGCCGGTAAAACAGCGATCACAGATAAAGAGACGTACGAGCGTCACATGGAATCAGTTGGTGGACTTCGCCACCCAAATCTGGTTCCGCTCAGAGCCTATTTCCAGGCCCAGGAAGAGAGACTCCTCATCTACGATTACCAGCCCAACGGCAGTCTCTTCTCCCTCATTCACGGTTCAAAGTCAACGAGGGCAAAGCCTCTTCACTGGACATCGTGTTTGAAAATAGCAGAGGACGTGGCCCAAGGTCTGTCCTACATACATCAAGCATGGAGACTTGTCCATGGCAATCTCAAGTCCTCCAACGTCCTCCTCGGCCCTGATTTCGAGGCTTGTCTCACCGACTACTGCCTCGCCGTCCTCGCCTCCCCCTCCGTAGACGACGATCTCGACTCCGCCTCTTATAAAGCTCCCGAAACCCGAAATCCCAGTGGGCAAGCAACGTCTAAAGCCGACGTGTATGCATTCGGCATTCTCCTGCTGGAGCTTCTAACGGGTAAACCTCCATCGCAGCATCCGGTTCTAATGCCAGATGATATGATGAACTGGGTTAGATCCACCAGGGACGACGATGATGGGGAAGATAACAGGATGGGGATGCTTCTTGAAGTAGCCATTGCCTGTAGTGTGACCTCGCCGGAGCAGAGGCCCACAATGTGGCAAGTCTTGAAAATGATACAGGAGATTAAAGAGAGTGTATTAATGGAGGACAACGAGTTGGACCCACTCACTGGGTTGTCCTAG 1989 0.5153 MLNTTQSLAPCLFILSVAFLTASSTAATHPPHAVSPSPSPTLPPSDAIALVMFKSKADLGNKLRFTASTSLNYCYWQGVTCLRGKVVRLVLEGLDLGGVFGPDTLSRLDQLRVLSLQNNSLVGPIPDLSKFFNLKALFLDHNSFTGSFPPSISSLHRLRTLDFSYNNLTGPLPIWLTKLDRLYYLRLESNRFNGTIPPLNQSTLQTFNVSRNNLFGAIPVTPTLLHFEASAFALNPGLCGEILHKECHPSQPFFSPSAPVATPPPPVGLGQNEQVHGVELAQPCPKNHKRTVVILGFSSGVFVLISSLLCFVIAMKRQRNQRNTAPTMASDSAATAQAAAVMRIEEENELEEKVKKVQGMQVAKSGSLVFCAGEAQLYTLEQLMRASAELLGRGSIGTTYKAVLDNRLIVSVKRLDAGKTAITDKETYERHMESVGGLRHPNLVPLRAYFQAQEERLLIYDYQPNGSLFSLIHGSKSTRAKPLHWTSCLKIAEDVAQGLSYIHQAWRLVHGNLKSSNVLLGPDFEACLTDYCLAVLASPSVDDDLDSASYKAPETRNPSGQATSKADVYAFGILLLELLTGKPPSQHPVLMPDDMMNWVRSTRDDDDGEDNRMGMLLEVAIACSVTSPEQRPTMWQVLKMIQEIKESVLMEDNELDPLTGLS* 663
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0816 662 Gene3D Transferase(Phosphotransferase) domain 1 464 656 - -
Vvi18g0816 662 Pfam Protein kinase domain 388 639 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g0816 662 FunFam Nuclear pore complex protein NUP107 44 197 - -
Vvi18g0816 662 SUPERFAMILY L domain-like 52 221 - -
Vvi18g0816 662 Gene3D Ribonuclease Inhibitor 201 251 IPR032675 -
Vvi18g0816 662 Gene3D Phosphorylase Kinase; domain 1 349 462 - -
Vvi18g0816 662 Gene3D Ribonuclease Inhibitor 45 200 IPR032675 -
Vvi18g0816 662 ProSiteProfiles Protein kinase domain profile. 385 649 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g0816 662 SUPERFAMILY Protein kinase-like (PK-like) 389 648 IPR011009 -
Vvi18g0816 662 Pfam Leucine rich repeat 133 192 IPR001611 GO:0005515
Vvi18g0816 662 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 22 646 IPR046959 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0816 Vvi-Chr18 8418530 8421557 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0816 46 655 Receptor kinase-like Gene Family AT5G43020 61.465 0.0 756
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vvi18g0816 Pkinase 2.5e-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0816 - - vvi:100250658 1269.6