Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0813 ATGTCTAGTTCATTTTTCATTGTTGTGATAACCTTGTTCATCTTGGGATGCCAAGGACAAAATCCAAAACGTGGCCTCCCTCCCCCTCAAGGACAATATCCAACACGTCCCCCCCCTCCCCCTCGTCTTCCTCCGCGTCCACGATTTCCAAGCTTGGGAGGTCCACTTCTCCCACGTCAACCAGCCAATAGGCCCGGACCCCTCAGTAACAGAAACCTTGTTCTGTTCATAACCCAAGAGCTCAAGAGGAACATTACATCTGACCCCCAAAACTATACAGGCTCCTGGGTTGGCAGGAACTACTGCCTCTTCAAGGGGTTCTACTGTGATACTGTGCCCGACAAGAACATTACTGGGCTTGCCGGCATTGATTTCAACGGCGCCAGGTTTGGCGGTAACTTAAACTTTTATCGCTTCATCCGCTTTCTTCCTGACATTGCCATCTTTCATGCAAATTCCAATAACTTCAGCGGCGTCATTCGTCCAAATATCAACAAATTGAGATATTTCTACGAGATTGATCTGAGCAATAATGGATTCCAGGGAGGGTTCCCCGTTTCCGTTATTGGTGCACTTCAATTGACCTTCGTGGACGTTCGTTTCAACACCTACAATGGCCCAGTTCCTCCTCGGGTATTCAGTATCCAAACTGATGTTCTCTTCATCAACAATAATAATTTCGCCCAAAGAATTCCTAGCGCATTCGGCAACACCACTGCGCGCTATATTACCCTTGCCAACAACGGATTCATCGGTTCCATCCCTCAGAGCATTGGCCGAACTTGGCAAACCCTAACTGAGGTTCTCTTCTTGAAAAACCGCCTCTCCGGTTGCCTCCCATATGAAATTGGGTTCTTGCAAATGGCCACCGTTTTTGATGCAGGGTTCAACACGTTGACGGGTCCTATACCGCAATCTTTTGCTTGCTTGAAGAAGCTGCAGCTGCTGAGCTTGGCGCACAACCAGTTCTACGGCAGAATTCCAGACTCATTATGTCGGCTACCCAACGCATACAATTTTACTTTGTCATATAATTACTTCAACTCCATAGGTCCATACTGCAAGAGGTTGGTGAACATTGGGAGGCTCGATGTGAGGAGGAACTGCATTACGGGTTTGCCGAATCAAAGATCTGCAGCGGAGTGTACGGCCTTCTACTCCGTATCTAGGACATGTCCGCGCCCGGGTTCCTTCAACGTAATTACTTGTTCGAACCCAGCTGCTTCATTAAGCAGCGCCCAAGTTGCTTCACTACAAGCAATGGCTCCGGCTCCCTCACCCGTCACCTACAAAGCCCTTGAGCCTCCCCGATGA 1314 0.4886 MSSSFFIVVITLFILGCQGQNPKRGLPPPQGQYPTRPPPPPRLPPRPRFPSLGGPLLPRQPANRPGPLSNRNLVLFITQELKRNITSDPQNYTGSWVGRNYCLFKGFYCDTVPDKNITGLAGIDFNGARFGGNLNFYRFIRFLPDIAIFHANSNNFSGVIRPNINKLRYFYEIDLSNNGFQGGFPVSVIGALQLTFVDVRFNTYNGPVPPRVFSIQTDVLFINNNNFAQRIPSAFGNTTARYITLANNGFIGSIPQSIGRTWQTLTEVLFLKNRLSGCLPYEIGFLQMATVFDAGFNTLTGPIPQSFACLKKLQLLSLAHNQFYGRIPDSLCRLPNAYNFTLSYNYFNSIGPYCKRLVNIGRLDVRRNCITGLPNQRSAAECTAFYSVSRTCPRPGSFNVITCSNPAASLSSAQVASLQAMAPAPSPVTYKALEPPR* 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0813 437 MobiDBLite consensus disorder prediction 21 68 - -
Vvi18g0813 437 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 77 414 - -
Vvi18g0813 437 SUPERFAMILY L domain-like 83 372 - -
Vvi18g0813 437 Gene3D Ribonuclease Inhibitor 85 405 IPR032675 -
Vvi18g0813 437 MobiDBLite consensus disorder prediction 27 54 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0813 Vvi-Chr18 8406106 8407419 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0813 79 398 Leucine-rich Repeat extension Gene Families AT3G24480 42.991 8.75e-82 258
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0813 - - vvi:100252217 832.402