Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0812 ATGGCAGTGGAGCTGATGATGGGGTACGCCAACGATAGTTTTGCAGCAAAAATGGAAGATAATGCTCTCCAGGAAGCTGCGTCTGCTGGGATCCAGAGCGTTGAGAAGCTTGTAAAGTTGCTATCTCAATGCCAGCAACAGAAGCAGACCACAACCTCTCTGGAAATTGATATTGATTGCACGGCTGTTGCGGACATGGCCGTCACCAAGTTCAAGAGGGTTATTTCGTTGCTGGATCGAACAAGAACTGGTCACGCTCGCTTCAGAAGGGCTCCTTTGGTGCCTCCTCAACAGCCGCCCCAAGATACCGACACCCCAGTTCCTGTTAGCCATCACCAGCCGGCTGAGGATAAACAAACCTCTGTTTCTAAGATTTATTGTCCAACTCCTGTTCATCGTCTCCCTCCTCTCCCTCATAACCACCAACCTCACCACCATCACCATCACCATAGCCCCAATCTAATGTTGCCCAAGAAGGTAGCCATAGAGAAGAAGGAATCTATGACTACAATCAATTTCACAACTTCTCATTCAGTCTCTGCTCCCAACTCTTTCGTATCATCGTTAACGGGAGACACCGAAAGCGTCCAACCGTCTTTATCGTCTGGGTTTCATATTTCGAATCTATCACAGGTTTCATCTGCGGGTCGGCCTCCTCTTTCCTCGTCTTCATTGAAGAGAAAGTGCAGTTCAATGGACGACGCAGGTGCCAAGTGCGGATCATCTTTTGGGCGGTGTCATTGTTCTAAGAAAAGGAAATTGAGAGTGAAGAGAGTGGTCAGAGTTCCTGCAATAAGCACCAAGATGGCTGATATTCCACCGGATGATTTTTCTTGGAGAAAGTATGGTCAGAAACCTATCAAAGGTTCTCCGCATCCAAGGGGATATTACAAGTGCAGTAGCGTGAGAGGGTGCCCCGCACGCAAACACGTGGAACGGGCTCTCGACGATCCGACGGTGCTGACTGTCACCTATGAAGGCGATCACAACCACTCTCAATCAATTACGGACGCTACTGCAGCTCTCGTTCTCGAATCATCCTAA 1044 0.4885 MAVELMMGYANDSFAAKMEDNALQEAASAGIQSVEKLVKLLSQCQQQKQTTTSLEIDIDCTAVADMAVTKFKRVISLLDRTRTGHARFRRAPLVPPQQPPQDTDTPVPVSHHQPAEDKQTSVSKIYCPTPVHRLPPLPHNHQPHHHHHHHSPNLMLPKKVAIEKKESMTTINFTTSHSVSAPNSFVSSLTGDTESVQPSLSSGFHISNLSQVSSAGRPPLSSSSLKRKCSSMDDAGAKCGSSFGRCHCSKKRKLRVKRVVRVPAISTKMADIPPDDFSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERALDDPTVLTVTYEGDHNHSQSITDATAALVLESS* 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0812 347 SMART WRKY_cls 273 333 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi18g0812 347 Pfam Plant zinc cluster domain 226 271 IPR018872 -
Vvi18g0812 347 MobiDBLite consensus disorder prediction 104 121 - -
Vvi18g0812 347 ProSiteProfiles WRKY domain profile. 268 334 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi18g0812 347 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 21 337 IPR044810 GO:0003700
Vvi18g0812 347 FunFam WRKY transcription factor 65 257 334 - -
Vvi18g0812 347 MobiDBLite consensus disorder prediction 90 121 - -
Vvi18g0812 347 SUPERFAMILY WRKY DNA-binding domain 270 333 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vvi18g0812 347 Gene3D WRKY domain 257 334 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vvi18g0812 347 Pfam WRKY DNA -binding domain 275 331 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0812 Vvi-Chr18 8392159 8393444 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0812 1 294 WRKY Transcription Factor Family AT4G24240 47.664 1.53e-80 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vvi18g0812 WRKY 3.2e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0812 - - vvi:100247092 606.29