Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0804 ATGGCTCAGCCTCAAGAACAGAAAACACACCAACAGCCGCACAACCTCCCATTCCTTTTGGACACTCTTTACTGCGAAGAGAACCACTGGGAGGAAGAAGTGAGAGAGGAGGGTTTCTTAGAAGAGGAAGAAGAAGAGAGCTATTACAGTGATGGCAGTAAACCAAACGCTCCACCGTTATTGGAGCCGGACCTCCTATGCGAAGACGAAGAGCTCGTCTCTTTGTTCTCAAAAGAAGAGAAAAATGACCTCCATAGTAACCCCGAAAGCAACCCATTAGCGGCTGGAGCTAGAAGCGAGGCCGTGGAGTGGATGCTGAGGGTCAATGCCCACTACTCTTTCTCTGCTCTCACTGCAGTCCTGGCTGTTAATTATTTTGATAGGTTTCTCTTCAGCTGCGATGTTCAGGGAGAAAAGCCATGGATGACCCAACTCGCCGCTGTGGCTTGTCTCTCCCTTGCTGCTAAGGTGGAAGAGACCCAAGTGCCCCTTTTACTAGACTTGCAAGTGGAGGAGACGATGTATGTGTTCGAGGCAAAGACCATTCAGAGGATGGAGATTATGGTGCTCTCCACGCTTCGATGGAAGATGAACCCTGTGACCCCGCTTTCATTTCTTGATTATATTACGAGGAGGCTTGGATTGAAAAATCATCTCTGTTGGGAATTTCTCAAGAGGTGTGAGCGCCTCCTTCTCTCTGTTCTTTCTGATTGTAGGTTCGGGTGTTATCTTCCTTCTGTAATCGCCACCGCCATAATGCTGCATGTCATCGATAGCGTAGAACCCTGCATTCGTGTCCAATACCAGAGCCAGCTACTGGGTATTCTCGGAATTGATAAGGACAAAGTAGAGGATTGCAGTCAGCTCATCCTGGATATAGCATCGAGTGCCCGTTGTCACCATCACAATAAACGCAAGTTTGCCTCCACACCGGGCAGTCCAAATGGCGTTATGGATGGATGGTTCAGCTGCGACAGCTCAAATGATTCATGGGCTGTAGCGGTTTCTTCCTCGCCTTCCTCATCGGAGCATTTGTCCAAGAAGAGTAGAGGTCAGGAGCAGCATCTGCAGACTCTCAACCAAGCTACTGCTGATGCCCCGACGGTCATTCCTCGCTAG 1119 0.4942 MAQPQEQKTHQQPHNLPFLLDTLYCEENHWEEEVREEGFLEEEEEESYYSDGSKPNAPPLLEPDLLCEDEELVSLFSKEEKNDLHSNPESNPLAAGARSEAVEWMLRVNAHYSFSALTAVLAVNYFDRFLFSCDVQGEKPWMTQLAAVACLSLAAKVEETQVPLLLDLQVEETMYVFEAKTIQRMEIMVLSTLRWKMNPVTPLSFLDYITRRLGLKNHLCWEFLKRCERLLLSVLSDCRFGCYLPSVIATAIMLHVIDSVEPCIRVQYQSQLLGILGIDKDKVEDCSQLILDIASSARCHHHNKRKFASTPGSPNGVMDGWFSCDSSNDSWAVAVSSSPSSSEHLSKKSRGQEQHLQTLNQATADAPTVIPR* 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0804 372 CDD CYCLIN_AtCycD-like_rpt1 97 195 - -
Vvi18g0804 372 CDD CYCLIN_AtCycD-like_rpt2 200 290 - -
Vvi18g0804 372 FunFam CYCLIN D32 199 288 - -
Vvi18g0804 372 FunFam D3-type cyclin 91 198 - -
Vvi18g0804 372 MobiDBLite consensus disorder prediction 336 372 - -
Vvi18g0804 372 Gene3D - 92 198 - -
Vvi18g0804 372 SUPERFAMILY Cyclin-like 182 310 IPR036915 -
Vvi18g0804 372 SMART Cyclin_C_2 200 316 IPR004367 -
Vvi18g0804 372 SUPERFAMILY Cyclin-like 68 198 IPR036915 -
Vvi18g0804 372 Pfam Cyclin, C-terminal domain 200 309 IPR004367 -
Vvi18g0804 372 SMART cyclin_7 103 191 IPR013763 -
Vvi18g0804 372 Gene3D - 199 288 - -
Vvi18g0804 372 PANTHER CYCLINS 70 292 IPR039361 -
Vvi18g0804 372 MobiDBLite consensus disorder prediction 33 62 - -
Vvi18g0804 372 ProSitePatterns Cyclins signature. 98 129 IPR006671 -
Vvi18g0804 372 Pfam Cyclin, N-terminal domain 79 198 IPR006671 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0804 Vvi-Chr18 8295163 8296620 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0804 1 293 Core Cell Cycle Gene Families AT4G34160 55.631 7.71e-102 304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0804 K14505 - vvi:100253927 690.263