Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0797 ATGGCGTCTTCCAAGAAAGATTTAGATCGGATCAAGGGTCCTTGGAGCCCCGAGGAAGACGAAGCGTTGCAGAGACTGGTGCAGAAGCACGGCCCTAGGAACTGGTCTTTGATCAGCAAATCCATCCCTGGGCGGTCCGGCAAGTCTTGCCGGCTGCGTTGGTGTAACCAGCTCTCTCCGCAGGTGGAGCACCGCGCCTTTACGCCGGAGGAGGACGCGACCATCATTAGAGCCCATGCGAGGTTCGGGAACAAATGGGCGACGATTGCTCGTCTCCTCGTTGGTCGCACGGATAACGCCATAAAGAACCACTGGAATTCAACTTTGAAGCGGAAATGCTCGTCTATAACGGAGGACATGATCGCCGATGGGCATGCACAACCGCCTCTTAAGAGATCGGCTAGTGTGGGTGCGGGCACAACGGTTTCGGGTCATAATCTTAGCCCAAGTAGTCCTTCGGGGTCCGAATTCAGTGATTCCAGTGCTCCTGGCATGGCTTCATCGCTTGTTTATAGACCAGTGCCGAGAACCGGTCCCATAGTTCTACCTACTCAGAAAATCGAGGCCGCCTCATCGACGAACGATCCCCCAACATCCCTCAGTCTCTCTCTCCCTGGATCCGATTCTTGCGAAGTGTCAAATCATTTATCAGGATCCGATCATGTTAAAATCCAAAACCAGATTCTCCAATCACCGGCGATACCGCCTGTACAGCTGCAACAAAACCCTGGATCCCCACGAAACATCCAGAACTGTGAGTTGGGTTTAGGTATGTCGGAGAAACCTTTCTTCACCCCCGAATTCTTGGCTGTGATGCAAGAAATGATCAGAAAGGAAGTGAGGAACTACATGTCGGGCATGGAGCAAAATGGTCTGTGTTTGCAGACTGAAGCTATTTGGAACGCAGTGATGAAGCGTATCGGAATTGGCAAAATCGAGTAG 942 0.5202 MASSKKDLDRIKGPWSPEEDEALQRLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRAFTPEEDATIIRAHARFGNKWATIARLLVGRTDNAIKNHWNSTLKRKCSSITEDMIADGHAQPPLKRSASVGAGTTVSGHNLSPSSPSGSEFSDSSAPGMASSLVYRPVPRTGPIVLPTQKIEAASSTNDPPTSLSLSLPGSDSCEVSNHLSGSDHVKIQNQILQSPAIPPVQLQQNPGSPRNIQNCELGLGMSEKPFFTPEFLAVMQEMIRKEVRNYMSGMEQNGLCLQTEAIWNAVMKRIGIGKIE* 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0797 313 ProSiteProfiles Myb-like domain profile. 7 58 IPR001005 -
Vvi18g0797 313 PANTHER MYB PROTEIN-RELATED 12 187 - -
Vvi18g0797 313 Gene3D - 65 128 - -
Vvi18g0797 313 ProSiteProfiles Myb-like domain profile. 59 109 IPR001005 -
Vvi18g0797 313 MobiDBLite consensus disorder prediction 134 163 - -
Vvi18g0797 313 CDD SANT 14 56 IPR001005 -
Vvi18g0797 313 FunFam MYB transcription factor 12 63 - -
Vvi18g0797 313 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 113 IPR017930 -
Vvi18g0797 313 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 7 62 IPR017930 -
Vvi18g0797 313 MobiDBLite consensus disorder prediction 126 163 - -
Vvi18g0797 313 FunFam Transcription factor MYB44 66 112 - -
Vvi18g0797 313 Pfam Myb-like DNA-binding domain 66 108 IPR001005 -
Vvi18g0797 313 Pfam Myb-like DNA-binding domain 12 58 IPR001005 -
Vvi18g0797 313 Gene3D - 11 63 - -
Vvi18g0797 313 SUPERFAMILY Homeodomain-like 9 105 IPR009057 -
Vvi18g0797 313 CDD SANT 66 109 IPR001005 -
Vvi18g0797 313 SMART sant 11 60 IPR001005 -
Vvi18g0797 313 SMART sant 63 111 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0797 Vvi-Chr18 8236658 8237599 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0797 4 313 MYB Transcription Factor Family AT4G37260 47.619 6.13e-94 280
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vvi18g0797 Myb_DNA-binding 1.6e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0797 K09422 - vvi:100243698 602.438