Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0796 ATGGATAGGACAGTTGGTTTCTTTGTTTTGGCTTTGCTATTAACTTTCTATCCATCTTCATCTGAAACGTATGATACTCTGAGCGAAGGCTCATCTCTTTCCGTGGAGAAATCAAATGATGTTCTCATTTCAGCAAATGGTATATTCTCTGCTGGGTTTTATCAGGTCGGCAACAACAGTTACAACACTTTCTGCTTCGCCATATGGTTCACAAAATCATGGGGTGCAACCACAGTTTGGATGGCGAACCGTGACCAACCGGTCAACGGTAGAGGCTCCAAGCTTTCTTTGTTGAGGAATGGCAATCTCCTCTTAACTGATGCTGGCAAAATCATGGTTTGGATGACCAACACCGTTTCAACCTCGTATGTGAGATTACAGCTCCTTAACACCGGCAATCTTGTTCTATATGCTTGGGAGAAGACGGTGATTTGGCAGAGCTTTGACTCACCCACAGATACCCTTCTTCCTCACCAGATACTGACAAAAGATACCAGCCTTATCTCATCAAGAAGCCAAAGCAACTATTCTTCTGGTTTTTATAAGCTATTTTTTGACATTGATAACGTCATCCGCCTTCTCTTCAATGGTCCTGTGGTTTCCAGCCTCTACTGGCCAGACCCAAGCCGGGTGACCTGGGAGGCTGCGAGGAGCACATACAACAACAGTCGAATCGCAGTATTCGATTCTTTGGGTTATTATAGAGCATCAGATGATTTGGAATTTCGGTCAGCGGATTTTGGTGCGGGGCCTCAGAGAAGATTGACCCTCGATTTCGATGGCAATCTTAGAATGTATAGTCTAGAAGAAACGAGAGGAACCTGGTCGGTTTCATGGCAGGCTATCTCCCAACCATGCCAGATTCATGGCATCTGCGGACCCAACAGTCTCTGCAGTTACACCCCTGCTTATGGCAGAGGATGCTCTTGCATGCCTGGATTCAAGATTGTAAATTCAACTGACTGGTCTTATGGGTGCGCACCAGAAACTGATATCGCTTGTAACCAAACTGAGGTGGGCTTCTTCCCACTCCCTCATGTTCAACTCTACGGCTATGACTATGGTCACTACCCCAATTACACCTATGAAAGCTGTGAAAATCTATGCTTACAGTTGTGCAAATGCAAGGCCTTCCTGCTAAATTTTGGGGACGGCGTTTACAATTGTTACCCAGTGGCCCTCTTGCTTAATGGATTCAGTTCGCCAAATTATCCTGAAACCTTGTATCTAAAACTGCCTAAAGCTAGTCTCTTTCCCAGATATGATCCCCTTGAAGAATTCACCATAAATTGTTCAGGCAACACTCGTTATATACAGCTAGATACAACATTGAAGTTTTTGAAGTTTTTGCTATGGTTTGCCTATGGACTGGGAGTTCTAGAGACGGCAATTGTCTTGCTGGTATGGCTTTTCCTATTTAGGGTACACCATGATCCAGTCTCAACTATGCAAGGTTACATCCTCGCTGCAAACGGGTTTAAAAGATTCAGTTATGCAGAGTTGAAGAAGGCCACGCGAGGTTTCACCCAAGAGATTGGAAGAGGAGGTGGAGGAATGGTATATAAAGGTGTATTGCTTGATCGTCGAGTGGCAGCAATCAAGTGCCTCAAAGAAGCCAATCAAGGAGAAGCAGAATTTCTAGCAGAAGTGAGCACCATTGGAAGGCTTAATCACATGAACTTAATAGAGACGTGGGGATATTGCATAGAGGGGAAGCACCGGCTGTTGGTGTATGAGTACATGGAACATGGATCCTTGGCACAAAAGCTATCGTCCAATACTCTTGATTGGGAGAAGAGGTTCCAAATAGCGCTTGGCACGGCCAGAGGCCTAGCTTATTTACACGAAGAATGCTTGGAGTGGGTTCTGCACTGTGACGTAAAGCCTCAGAACATACTCTTGGACTCTAATTACCAGCCAAAAGTGGCAGATTTTGGGATGTCGAAACTGCGTAACAGAGGAGGGCTTGGCAATTCAAGTTTCTCGAGGGTCAGAGGAACCAGAGGATACATGGCTCCTGAATGGGTATTCAACCTTCCCATAACCTCCAAGGTAGACGTTTATGGCTATGGAATCGTGGTTTTGGAGATGGTGACAGGGAAGAGCCCATCTGCTATCCCCGATACTGATGCCCAAGGAGAGACAGAGCAGCCTGGGTTGATTAAATGGGTGAGGGATCGAATGAATAGGATTGGTGTCAGGGGGTCGTGGATTGAAGACATCCTGGACCCTGTGATGCAAGGCGAATGCAACATGCGCCAGATGGAAATTCTGATTGGAGTTGCCTTGGAATGTGTGAAGGGAGACAGGGACTCAAGACCCACGATGAGCCAAATAGTTGAGAAGCTTATGTGCCCGGAGGACAGGCCGGAGCAGGATGGCTTCCTCTCCATGTCCTGA 2400 0.4625 MDRTVGFFVLALLLTFYPSSSETYDTLSEGSSLSVEKSNDVLISANGIFSAGFYQVGNNSYNTFCFAIWFTKSWGATTVWMANRDQPVNGRGSKLSLLRNGNLLLTDAGKIMVWMTNTVSTSYVRLQLLNTGNLVLYAWEKTVIWQSFDSPTDTLLPHQILTKDTSLISSRSQSNYSSGFYKLFFDIDNVIRLLFNGPVVSSLYWPDPSRVTWEAARSTYNNSRIAVFDSLGYYRASDDLEFRSADFGAGPQRRLTLDFDGNLRMYSLEETRGTWSVSWQAISQPCQIHGICGPNSLCSYTPAYGRGCSCMPGFKIVNSTDWSYGCAPETDIACNQTEVGFFPLPHVQLYGYDYGHYPNYTYESCENLCLQLCKCKAFLLNFGDGVYNCYPVALLLNGFSSPNYPETLYLKLPKASLFPRYDPLEEFTINCSGNTRYIQLDTTLKFLKFLLWFAYGLGVLETAIVLLVWLFLFRVHHDPVSTMQGYILAANGFKRFSYAELKKATRGFTQEIGRGGGGMVYKGVLLDRRVAAIKCLKEANQGEAEFLAEVSTIGRLNHMNLIETWGYCIEGKHRLLVYEYMEHGSLAQKLSSNTLDWEKRFQIALGTARGLAYLHEECLEWVLHCDVKPQNILLDSNYQPKVADFGMSKLRNRGGLGNSSFSRVRGTRGYMAPEWVFNLPITSKVDVYGYGIVVLEMVTGKSPSAIPDTDAQGETEQPGLIKWVRDRMNRIGVRGSWIEDILDPVMQGECNMRQMEILIGVALECVKGDRDSRPTMSQIVEKLMCPEDRPEQDGFLSMS* 800
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0796 799 PIRSF SRK 1 795 IPR024171 GO:0004674
Vvi18g0796 799 ProSiteProfiles Bulb-type lectin domain profile. 18 149 IPR001480 -
Vvi18g0796 799 CDD PAN_AP_plant 330 413 - -
Vvi18g0796 799 FunFam Serine/threonine-protein kinase 581 791 - -
Vvi18g0796 799 Gene3D Phosphorylase Kinase; domain 1 474 580 - -
Vvi18g0796 799 SMART blect_4 33 151 IPR001480 -
Vvi18g0796 799 FunFam Putative receptor protein kinase ZmPK1 21 150 - -
Vvi18g0796 799 Pfam Protein kinase domain 509 781 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g0796 799 SMART serkin_6 506 784 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g0796 799 Gene3D - 20 150 IPR036426 -
Vvi18g0796 799 ProSiteProfiles PAN/Apple domain profile. 334 413 IPR003609 -
Vvi18g0796 799 CDD B_lectin 37 151 IPR001480 -
Vvi18g0796 799 Pfam S-locus glycoprotein domain 253 316 IPR000858 GO:0048544
Vvi18g0796 799 FunFam S-receptor-like serine/threonine-protein kinase 476 580 - -
Vvi18g0796 799 PANTHER OS07G0415500 PROTEIN 10 784 - -
Vvi18g0796 799 ProSitePatterns Protein kinases ATP-binding region signature. 512 534 IPR017441 GO:0005524
Vvi18g0796 799 Pfam D-mannose binding lectin 77 165 IPR001480 -
Vvi18g0796 799 SUPERFAMILY Protein kinase-like (PK-like) 484 783 IPR011009 -
Vvi18g0796 799 SUPERFAMILY alpha-D-mannose-specific plant lectins 64 207 IPR036426 -
Vvi18g0796 799 ProSiteProfiles Protein kinase domain profile. 506 796 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g0796 799 Gene3D Transferase(Phosphotransferase) domain 1 581 793 - -
Vvi18g0796 799 ProSitePatterns Serine/Threonine protein kinases active-site signature. 622 634 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0796 Vvi-Chr18 8224475 8226874 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0796 491 784 Receptor kinase-like Gene Family AT3G58690 39.016 1.61e-62 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Vvi18g0796 Pkinase 4.1e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0796 - - vvi:100243693 1564.28