Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0794 ATGGATGCGCCAGTTCTTTTGCTTCTTCTCGCTCTGCTTCTATCTTCTCCACTTCCATCGTCTACCCTCGACAGTTTGAGTCAAGGCTCATCCCTATCAGTTGGGAAGCCTGAACAAGTTTTAATTTCACAAAGTGGAATCTTTTCAGCCGGCTTCTACCCCGTCGGTGACAATGCTTATTGTCTTGCCATATGGTTCACCAAACCATCCTACGACGGCAAACATACGGTTGTTTGGATGGCAAACCGAAACCAACCAGTTAATGGGAATTTCTCAAAGCTTTCCCTGCTAAAAAATGGTGAACTTATCTTAACAGATGCCGGGCGGTTCATAGTTTGGACCACAAAGGCGGTTGGGGTTTCTCCGGTGCGATTACATCTCTTCAACACTGGTAACCTTGTGTTGCGTACCTCGGATGGTGTTATTCAATGGCAAAGTTTCGATTCACCAACAGATACCCTTCTCCCTCACCAGCCACTCACCAGAAATACGAGACTTGTCTCTTCAAGAACCAAAACCAACTTTTTCTCAGGGTTTTATAAGCTCTATTTTGACAACAGTAACGTCCTCAGTCTTGTGTTCGATGGGCCAAACGTTTCAAGCGTTTACTGGCCCCCATCGTGGCTTGTAAGCTGGCAGGCGGGCAGATCGGCATACAATAGCAGCAGAATTGCATTACTAGATTACTTTGGCTATTTTTCTTCATCCGACGGTTTTAAGCTTCAGTCCTCGGATTTTGGTGAGAGAGTCCGGCGAAGATTGACCCTGGATATTGATGGCAACTTACGATTATACAGTTTTGAGGAAGAGAGAAATAAGTGGGTTGTTACTGGGGAAGCCATCACGGAACAATGCAAAGTTCATGGAATATGCGGACCCAACAGTGTTTGTACCTATGTGCCCGGTTCTGGGAGTGGAAGGAGATGCTCTTGCATACCTGGATATGAGGTGAAAAATCGCACTGACCGAACTTATGGATGCATACAAAAATTCAATCTTTCTTGCAACTCACAGAAGGTTGGTTTCCTCCTACTCCCACACGTGGAGTTCTACGGCTATGATTATGACTGTTACCCCAATTACACCTTACAGATGTGTAAAAAACTGTGCTTGGAAAAATGCGGTTGCATAGGATTTCAATACAAGTACGATCATATATGTTATCCTAAGCGGATGTTACTCAACGGATACCGCTCACCTAGTTTTGAAGGACATATATATCTAAAATTGCCCAAAGCTAGTCTCCTTTCCTATGACAAACCCGTTGAGGAATTCATGTTAGATTGCTCGGAAAACCGCACAGAGCAGCTAGTAAGAACCTATTCAAAAGCCCATGAAAATGGAGTGTTAAAGTCCATCCTCTGGTTTGTCTGTGCAATTGGAGGAGTTGAGATGATTTGCATCTGTGTGGTGTGTTGTTTCTTGATGATGAAGGCCCAGCAAAACACCAATACAGATCCGCCAGGCTACATTTTAGCCGCCACGGGATTCAGAAAATTCACCTATACTGAGCTGAAGAAAGCAACACGGGGTTTCAGTGAGGAGATTGGAAGAGGAGGAGGTGGGATTGTATATAAAGGTGTCTTGTCAGACCACCGAGTAGCAGCCATCAAGCAGCTCAATGGAGCTAACCAAGGAGAAGCTGAATTTTTGGCAGAAGCAAGCACCATTGGGAGGCTTAACCACATGAACTTGATAGAGATGTGGGGTTATTGCTTTGAGGGGAAGCACAGGCTCTTGGTTTATGAATACATGGAGCATGGATCACTAGCACAAAACCTCACTTCCAATACACTTGATTGGCAGAAGAGGTTCAATATTGCGGTGGGCACAGCAAAAGGTCTGGCTTATTTACACGAAGAGTGCTTGGAGTGGGTTCTACACTGCGATGTGAAGCCTCAAAACATACTCCTAGACTCTAATTATCAGCCAAAGGTGGCAGACTTCGGCCTGTCAAAGTTACAGAACAGAGGAGGAATCAACAATTCAAGATTGTCGAGGATCAGAGGAACGAGAGGTTACATGGCTCCAGAGTGGGTTTTGAACCTCCCCATCACGTCCAAAGTAGACGTTTATAGCTATGGTATTGTGGTTCTGGAGATGATTACCGGTCTAAGAAGTGTTGCAAATGCCATCCACGGTACAGATGGCATAGGGGAACGTCAGAGTTTGGTGGCATGGGTGAAAGGGAAGATGAATAGTGCAACTGCAGTTGCTTCGTGGATTGAAGAAATCCTAGACCCGTCGATGGAAAGCAAATATGACATGGGTGAGATGGAAATTCTAGTATCAGTGGCTCTGCAATGTGTGGAATTGGATAAAGATGAAAGACCCACCATGAGTCAGGTGGTCGAGCTGCTTCTCCGCCGTGGATGTTGA 2379 0.4527 MDAPVLLLLLALLLSSPLPSSTLDSLSQGSSLSVGKPEQVLISQSGIFSAGFYPVGDNAYCLAIWFTKPSYDGKHTVVWMANRNQPVNGNFSKLSLLKNGELILTDAGRFIVWTTKAVGVSPVRLHLFNTGNLVLRTSDGVIQWQSFDSPTDTLLPHQPLTRNTRLVSSRTKTNFFSGFYKLYFDNSNVLSLVFDGPNVSSVYWPPSWLVSWQAGRSAYNSSRIALLDYFGYFSSSDGFKLQSSDFGERVRRRLTLDIDGNLRLYSFEEERNKWVVTGEAITEQCKVHGICGPNSVCTYVPGSGSGRRCSCIPGYEVKNRTDRTYGCIQKFNLSCNSQKVGFLLLPHVEFYGYDYDCYPNYTLQMCKKLCLEKCGCIGFQYKYDHICYPKRMLLNGYRSPSFEGHIYLKLPKASLLSYDKPVEEFMLDCSENRTEQLVRTYSKAHENGVLKSILWFVCAIGGVEMICICVVCCFLMMKAQQNTNTDPPGYILAATGFRKFTYTELKKATRGFSEEIGRGGGGIVYKGVLSDHRVAAIKQLNGANQGEAEFLAEASTIGRLNHMNLIEMWGYCFEGKHRLLVYEYMEHGSLAQNLTSNTLDWQKRFNIAVGTAKGLAYLHEECLEWVLHCDVKPQNILLDSNYQPKVADFGLSKLQNRGGINNSRLSRIRGTRGYMAPEWVLNLPITSKVDVYSYGIVVLEMITGLRSVANAIHGTDGIGERQSLVAWVKGKMNSATAVASWIEEILDPSMESKYDMGEMEILVSVALQCVELDKDERPTMSQVVELLLRRGC* 793
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0794 792 ProSiteProfiles PAN/Apple domain profile. 335 411 IPR003609 -
Vvi18g0794 792 SMART serkin_6 510 787 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g0794 792 FunFam S-receptor-like serine/threonine-protein kinase 478 584 - -
Vvi18g0794 792 Pfam D-mannose binding lectin 76 167 IPR001480 -
Vvi18g0794 792 ProSitePatterns Protein kinases ATP-binding region signature. 516 538 IPR017441 GO:0005524
Vvi18g0794 792 Gene3D Transferase(Phosphotransferase) domain 1 585 790 - -
Vvi18g0794 792 FunFam Putative receptor protein kinase ZmPK1 20 149 - -
Vvi18g0794 792 CDD PAN_AP_plant 331 411 - -
Vvi18g0794 792 Pfam S-locus glycoprotein domain 249 318 IPR000858 GO:0048544
Vvi18g0794 792 SUPERFAMILY alpha-D-mannose-specific plant lectins 59 193 IPR036426 -
Vvi18g0794 792 Pfam Protein kinase domain 513 785 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g0794 792 ProSiteProfiles Protein kinase domain profile. 510 788 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g0794 792 CDD B_lectin 34 150 IPR001480 -
Vvi18g0794 792 SUPERFAMILY Protein kinase-like (PK-like) 486 787 IPR011009 -
Vvi18g0794 792 FunFam Serine/threonine-protein kinase 585 791 - -
Vvi18g0794 792 CDD EGF 285 316 - -
Vvi18g0794 792 Gene3D - 20 149 IPR036426 -
Vvi18g0794 792 PANTHER OS07G0415500 PROTEIN 7 788 - -
Vvi18g0794 792 ProSitePatterns Serine/Threonine protein kinases active-site signature. 626 638 IPR008271 GO:0004672|GO:0006468
Vvi18g0794 792 Gene3D Phosphorylase Kinase; domain 1 475 584 - -
Vvi18g0794 792 ProSiteProfiles Bulb-type lectin domain profile. 23 148 IPR001480 -
Vvi18g0794 792 PIRSF SRK 1 790 IPR024171 GO:0004674
Vvi18g0794 792 Gene3D - 150 289 - -
Vvi18g0794 792 SMART blect_4 32 150 IPR001480 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0794 Vvi-Chr18 8215595 8217973 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0794 500 787 Trihelix Transcription Factor Family AT5G38560 42.177 4.28e-67 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Vvi18g0794 Pkinase 9.3e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0794 - - vvi:100260797 1572.76