Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0792 ATGGATAGGACAGTTGGTTTCTTTGTTTTGGCTTTGCTATTAACTTGCTATCCATCTTCATCTGACACGTATGATACTCTGAGCGAAGGCTCATCTCTTTCTGCGGAGAAATCAAGTGACGTTCTCATTTCAGCAAATGGTATATTCTCTGCTGGGTTTTACCAGGTCGGCAACAACACTTTCTGCTTCGCCATATGGTTCACAAAATCATTGGGTGCAACCACAGTTTGGATGGCGAACCGTGACCAACCGGTCAACGGTAGAGGCTCCAAGCTTTCTTTGTTGAGGAATGGCAATCTCCTCTTAACTGATGCTGGTAAAATCATGGTTTGGATGATCAACACCGTTTCAACCTCCTCTGTGAGATTACAGCTCCTTAACACAGGCAATCTTGTACTGTATGCTTGGGAGAAGACGGTGATTTGGCAGAGCTTTGACTCACCCACAGATACTCTTCTTCCTCACCAGATACTGACCAAAGATACCAGCCTTATCTCATCAAGAAGCCAAAGCAACTATTCTTCTGGTTTTTATAAGCTATTTTTTGACAGTGATAACGTCGTCCGCCTTCTCTTCAATGGTACTGAGGTTTCCAGCATCTACTGGCCAGACCCAAGCCTGGTGACCTGGGATGCTGGAAGGAAAACATTCAACGACAGTCGAATCGCAGTATTCGATTCTTTGGGTTATTATAGAGCATCAGATGATTTGGAATTTCGGTCAGCGGATTTTGGGGCGGGGCCTCAGAGAAGATTGGCCCTCGATTTCGATGGCAATCTTAGAATGTATAGTCTAGAAGAAACGAGAGGAACCTGGTCGGTTTCATGGCAGGCTATCTCCCAACCATGCCAGATTCATGGCATCTGCGGACCCAACAGTCTCTGCAGTTACACCCCTGCTTATGGCAGAGGATGCTCTTGCATGCCTGGATTCAAGATTGTAAATTCAACTGACTGGTCTTATGGGTGTGCACCAGAAACTGATATCGCTTGTAACCAAACTGAGGTGGGCTTCTTCCCACTCCCTCATGTTCAACTCTACGGCTATGACTATGGTCACTACCCCAACTACACCTATGAAAGGTGTGAAAATCTATGCTTACAGTTGTGCAAATGCAAGGCCTTCCTGCTAAATTTTAGCGACGGCCTTTACAATTGTTACCCAAAGACCCTCTTGCTTAATGGATTCAGTTCGCCAAATTACCCTGGAACCATGTATCTAAAACTGCCTAAAGCTAGTCTCTTTCCCAGATATGATCCCCTTGAAGAATTCACCATAAATTTTGTAGAGACGGCAATTGTCTTGCTGGTATGGATTTTCTTAGTTAGGGTACACCATGATCCAGTCTCCACCATGCAAGGCTACATCCTCGCTGCAAACGGGTTTAAAAGATTCAGTTATGCAGAGTTGAAGAAGGCCACGCGAGGTTTCACCCAAGAGATTGGAAGAGGAGGTGGAGGAATGGTATATAAAGGTGTATTGCTTGATCGTCGAGTGGCAGCAATCAAGCGCCTCAAAGAAGCCAATCAAGGAGAAGCAGAATTTCTAGCAGAAGTGAGCACCATTGGAAGGCTTAATCACATGAACTTAATAGAGACGTGGGGATATTGCATAGAGGGGAAGCACCGGCTTTTGGTGTATGAGTACATGGAACATGGATCCTTGGCACAAAAGCTATCTTCCAATACTCTTGATTGGGAGAAGAGGTTCCAAATAGCGCTTGGCACGGCCAGAGGCCTAGCTTATTTACACGAAGAATGCTTGGAGTGGGTTCTGCACTGTGACGTCAAGCCTCAGAACATACTCTTGGACTCTAATTACCAGCCAAAAGTGGCCGATTTTGGGATGTCGAAACTGCGTAACAGAGGAGGGCTTGACAATTCAAGTTTCTCGAGGATCAGAGGACCCAGAGGATACATGGCTCCTGAATGGGTATTCAACCTTCCCATAACCTCCAAGGTAGACGTTTATAGCTATGGAATCGTAGTTTTGGAGATGGTGACAGGGAAGAGCCCAACTGCTATCTCCGATACTGATGCCCAAGGAGAGACAGAGCAGCGTGGGTTGATTAAATGGATGAGGGATCGAATGAATGGGATTGGTGCCAGGGGGTCGTGGATTGAAGACATCCTGGACCCTGTGATGCAAGGCGAATGCGACATGCGCCAGATGGAAATTCTGATTGGAGTTGCCTTGGAATGTGTAGAGGAAGACAGGGACTCAAGACCCACGATGAGCCAGGTAGTTGAGAAGCTTATGTGCCCGGAGGAGAGGGCGGAGCAGGATGGCTACCTCTTCATGTCCTGA 2307 0.466 MDRTVGFFVLALLLTCYPSSSDTYDTLSEGSSLSAEKSSDVLISANGIFSAGFYQVGNNTFCFAIWFTKSLGATTVWMANRDQPVNGRGSKLSLLRNGNLLLTDAGKIMVWMINTVSTSSVRLQLLNTGNLVLYAWEKTVIWQSFDSPTDTLLPHQILTKDTSLISSRSQSNYSSGFYKLFFDSDNVVRLLFNGTEVSSIYWPDPSLVTWDAGRKTFNDSRIAVFDSLGYYRASDDLEFRSADFGAGPQRRLALDFDGNLRMYSLEETRGTWSVSWQAISQPCQIHGICGPNSLCSYTPAYGRGCSCMPGFKIVNSTDWSYGCAPETDIACNQTEVGFFPLPHVQLYGYDYGHYPNYTYERCENLCLQLCKCKAFLLNFSDGLYNCYPKTLLLNGFSSPNYPGTMYLKLPKASLFPRYDPLEEFTINFVETAIVLLVWIFLVRVHHDPVSTMQGYILAANGFKRFSYAELKKATRGFTQEIGRGGGGMVYKGVLLDRRVAAIKRLKEANQGEAEFLAEVSTIGRLNHMNLIETWGYCIEGKHRLLVYEYMEHGSLAQKLSSNTLDWEKRFQIALGTARGLAYLHEECLEWVLHCDVKPQNILLDSNYQPKVADFGMSKLRNRGGLDNSSFSRIRGPRGYMAPEWVFNLPITSKVDVYSYGIVVLEMVTGKSPTAISDTDAQGETEQRGLIKWMRDRMNGIGARGSWIEDILDPVMQGECDMRQMEILIGVALECVEEDRDSRPTMSQVVEKLMCPEERAEQDGYLFMS* 769
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0792 768 Pfam D-mannose binding lectin 74 162 IPR001480 -
Vvi18g0792 768 CDD STKc_IRAK 481 753 - -
Vvi18g0792 768 Pfam S-locus glycoprotein domain 250 313 IPR000858 GO:0048544
Vvi18g0792 768 CDD PAN_AP_plant 327 410 - -
Vvi18g0792 768 Gene3D - 20 147 IPR036426 -
Vvi18g0792 768 ProSitePatterns Protein kinases ATP-binding region signature. 481 503 IPR017441 GO:0005524
Vvi18g0792 768 Gene3D Transferase(Phosphotransferase) domain 1 550 764 - -
Vvi18g0792 768 Gene3D Phosphorylase Kinase; domain 1 442 549 - -
Vvi18g0792 768 ProSitePatterns Serine/Threonine protein kinases active-site signature. 591 603 IPR008271 GO:0004672|GO:0006468
Vvi18g0792 768 SMART serkin_6 475 753 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g0792 768 SMART blect_4 33 148 IPR001480 -
Vvi18g0792 768 Pfam Protein kinase domain 478 750 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g0792 768 ProSiteProfiles Protein kinase domain profile. 475 767 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g0792 768 SUPERFAMILY Protein kinase-like (PK-like) 453 752 IPR011009 -
Vvi18g0792 768 SUPERFAMILY alpha-D-mannose-specific plant lectins 61 205 IPR036426 -
Vvi18g0792 768 CDD B_lectin 37 148 IPR001480 -
Vvi18g0792 768 ProSiteProfiles PAN/Apple domain profile. 331 410 IPR003609 -
Vvi18g0792 768 PIRSF SRK 1 763 IPR024171 GO:0004674
Vvi18g0792 768 FunFam S-receptor-like serine/threonine-protein kinase 445 549 - -
Vvi18g0792 768 PANTHER OS07G0415500 PROTEIN 10 753 - -
Vvi18g0792 768 FunFam Serine/threonine-protein kinase 550 760 - -
Vvi18g0792 768 FunFam Putative receptor protein kinase ZmPK1 21 147 - -
Vvi18g0792 768 ProSiteProfiles Bulb-type lectin domain profile. 24 146 IPR001480 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0792 Vvi-Chr18 8196678 8199086 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0792 465 757 Trihelix Transcription Factor Family AT5G38560 39.799 4.31e-62 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Vvi18g0792 Pkinase 5.5e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0792 - - vvi:100243693 1483.39