Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0789 ATGTATCTAAAACTGCCTAAAGCTAAATTCACCATGAATTGTTCAGGCAACACTCGTTATATACAGCTAGATACAACATATCGCAAGGGCCATGAAAATGGGTCATTGAAGTTTTTGCTTTGGTTTGCCTACGTACTGGGAGTTCTAGAGGGGGCAATTGTCTTGCTGGTATGGCTTTTCTTATTTAGGGTACACCATGATCCAGTCTCGACCATGCAAGGCTACATCCTCGTTGCAAACGGGTTTAAAAGATTCAGCTATGCAAAGTTGAAGAAGGCCACGCGAGGTTTCACCCAAGAGATTGGAAGAGGAGGTGGAGGAGTGGTATATAAAGGTGTATTGCTTGATCGTCGAGTGGCAGCAATCAAGCGCCTCAAAGAAGCCAATCAAGGAGAAGCAGAATTTCTAGCAGAAGTGAGCACCATTGGAAGGCTTAATCACATGAACTTAATAGAGACGTGGGGATATTGCATAGAGGGGAAGCACCGGCTGTTGGTGTATGAGTACATGGAACATGGATCCTTGGCACAAAAGCTATCTTCCAATACTCTTGATTGGGAGAAGAGGTTCCAAATAGCGCTTGGCACGGCCAGAGGCCTAGCTTATTTACACGAAGAATGCTTGGAGTGGGTTCTGCACTGTGACGTCAAGCCTCAGAACATACTCTTGGACTCTAATTACCAGCCAAAAGTGGCCGATTTTGGGATGTCGAAACTGCGAAACAGAGGAGGGCTTGACAATTCAAGTTTCTCGAGGATCAGAGGAACCAGAGGATACATGGCTCCTGAATGGGTATTCAACCTTCCCATAACCTCCAAGGTAGACGTTTATAACTATGGAATCGTGGTTTTGGAGATGGTGACAGGGAAGAGCCCAACTGCTATCCCCGATACTGATGCCCAAGGAGAGACAGAGCAGCGTGGGTTGATTAAATGGGTGAGGGATCGAATGAATGGGATTGGTGCCAGGGGGTCGTGGATTGAAGACATCCTGGACCCTGTGATGCAAGGCGAATGCGACCTGCGCCGGATGGAAATTCTGATTGGAGTTGCCTTGGAATGTGTGGAGGAAGACAGGGACTCAAGACCCACGATGAGCCAGATAGTTGAGAAGCTTATGTGA 1122 0.4715 MYLKLPKAKFTMNCSGNTRYIQLDTTYRKGHENGSLKFLLWFAYVLGVLEGAIVLLVWLFLFRVHHDPVSTMQGYILVANGFKRFSYAKLKKATRGFTQEIGRGGGGVVYKGVLLDRRVAAIKRLKEANQGEAEFLAEVSTIGRLNHMNLIETWGYCIEGKHRLLVYEYMEHGSLAQKLSSNTLDWEKRFQIALGTARGLAYLHEECLEWVLHCDVKPQNILLDSNYQPKVADFGMSKLRNRGGLDNSSFSRIRGTRGYMAPEWVFNLPITSKVDVYNYGIVVLEMVTGKSPTAIPDTDAQGETEQRGLIKWVRDRMNGIGARGSWIEDILDPVMQGECDLRRMEILIGVALECVEEDRDSRPTMSQIVEKLM* 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0789 373 Gene3D Transferase(Phosphotransferase) domain 1 170 373 - -
Vvi18g0789 373 FunFam S-receptor-like serine/threonine-protein kinase 65 169 - -
Vvi18g0789 373 ProSitePatterns Protein kinases ATP-binding region signature. 101 123 IPR017441 GO:0005524
Vvi18g0789 373 FunFam Serine/threonine-protein kinase 170 373 - -
Vvi18g0789 373 Pfam Protein kinase domain 98 370 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g0789 373 ProSitePatterns Serine/Threonine protein kinases active-site signature. 211 223 IPR008271 GO:0004672|GO:0006468
Vvi18g0789 373 SUPERFAMILY Protein kinase-like (PK-like) 72 372 IPR011009 -
Vvi18g0789 373 PANTHER OS07G0415500 PROTEIN 23 372 - -
Vvi18g0789 373 ProSiteProfiles Protein kinase domain profile. 95 373 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g0789 373 SMART serkin_6 95 373 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g0789 373 Gene3D Phosphorylase Kinase; domain 1 62 169 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0789 Vvi-Chr18 8172102 8173596 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0789 77 372 Trihelix Transcription Factor Family AT5G38560 38.742 5.17e-65 217
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Vvi18g0789 Pkinase 6.7e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0789 - - vvi:100243693 712.99