Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0788 ATGGATGCGCCAGTTCTTTTGCTTCTTCTCACTCTGCTTCTATCTTCTCCACTTCCATCGTCCACCCTCGACAGTTTGAGTCAAGGCTCATCCCTCTCAGTTGGAAAGCCTGAACAAGTTTTGATTTCACAAAGTGGAATCTTCTCAGCTGGCTTCTACCCCGTCGGTGATAATGCTTATTGTCTTGCCATATGGTTCACCAAACCATCCTACGACGGCAAACATACCGCTGTTTGGATGGCAAACCGAAACCAACCAGTTAATGGGAATTTCTCAAAGCTTTCGCTGCTAGAAAGTGGTGATCTTATCTTAACAGATGCTGGGCGGTTCATAGTTTGGACCATAAAGAGGGTTGGGATTTCTCCGGTGCAATTACACCTCTTCAACACTGGTAACCTTGTGCTGCGTACCTCGGATGGTGTTATTCAATGGCAAAGTTTCGATTCACCAACAGATACCCTTCTCCCTCACCAACCACTCACCAGAAATACGAGACTCGTCTCTTCAAGAACCAAAACCAACTTTTTCTCAGGGTTTTATAAGCTCTATTTTGACAACAATAACGTCCTCAGTCTTGTCTTCGATGGGCGGGACGCTTCAAGCATTTACTGGCCCCCATCGTGGCTTGTAAGCTGGCAGGCGGGAAGATCGGCATACAACAGCAGCAGAACTGCATTACTAGATAACTTTGGCTATTTTTCTTCATCCGACGATTTTAAGTTTCAGTCCTCGGATTTTGGTGAGAGAGTCCAAAGAAGATTGACCCTGGATATTGATGGCAACTTACGATTATACAGTTTTGAGGAAAGGAGAAATAAGTGGGTTGTTACTTGGCAAGCCATCACGCTACAATGCAACATTCATGGAATATGCGGACCCAACAGTATTTGTACCTATGTGCCTGGTTCTGGGAGTGGAAGGAGATGCTCTTGCATACCTGGATATGAGATGAAAAATCGCACTGACCGAACTTATGGATGCATACCTAAATTCAATCTTTCTTGCGACTCACAGAAGGTTGGTTTCCTCCTACTCCCACACGTTGAGTTCTACGGCTATGATTATGGCTATTACCCCAATTACACCTTACAGATGTGTGAAAAACTGTGCTTGGAAATATGTGGCTGCATAGGATATCAATACAGCTATAATTCGGATGTTTATAAATGTTATCCTAAGCGGCTGTTGCTCAACGGATACCGCTCGCCTAGTTTTGTAGGACATATATACCTAAAATTGCCTAAAGCTAGTCTTCTTTCCTATGAAAAACCGGTTAAGGAATTCATGTTAGATTGCTCTGGCAACCGCTCAGAGCAGCTAGTAAGATCTTATGCAAAAGCCCACGAAAATGAAGTGTTAAAGTTCATCCTCTGGTTTGCGTGCGCAATTGGAGCAGTTGAGATGGTTTGCATTTGTATGGTGTGGTGTTTCTTGATGAAGGCCCAGCAAAACACCAGTACAGATCCGCCAGGCTACATTTTAGCTGCCACGGGATTCAGAAAATTCACCTATACTGAGCTGAAGAAAGCAACACGGGGTTTCAGTGAGGAGATTGGCAGAGGAGGAGGTGGGGTTGTATACAAAGGTGTCTTATCAGACCACCGAGTGGCAGCCATCAAGCAGCTCAGTGGAGCTAACCAAGGAGAATCTGAATTCTTGGCAGAAGTAAGTACCATTGGGAGGCTTAACCACATGAACTTGATAGAGATGTGGGGTTATTGCTTTGAGGGGAAGCACAGGCTCTTGGTTTATGAATACATGGAGCATGGATCACTAGCACAAAACCTCACTTCCAATACACTTGATTGGCAGAAGAGGTTCGACATTGCGGTGGGCACAGCAAAAGGCCTGGCTTATTTACACGAAGAGTGCTTGGAGTGGGTTCTACACTGCGATGTGAAGCCTCAAAACATACTCCTAGACGTTAATTATCAGCCAAAGGTGGCAGACTTCGGCCTGTCAAAGTTACAGAACAGAGGAGAAATCAACAATTCGAGATTGTCGAGGATCAGAGGAACAAGAGGTTACATGGCTCCAGAATGGGTTTTGAACCTCCCCATCACCTCCAAAGTAGACGTTTATAGCTATGGTATTGTGGTTCTGGAGATGGTTACCGGCCGAAGGAGTGCTTCAATGGCCATCCACGGTACAGATGGCATAGGGGAACGTCAGAGTTTGGTGGCATGGGTGAAAGGGAAGATGAATGGAGCAACTGCGGTTGCTTCGTGGATGAAAGAAATCCTAGACCCGTCGATGGAAGGCGAATATGACATGGGTGAGATGGAAATTCTAGTAGCAGTGGCTTTGCAATGTGTGGAATTGGACAAGGATGAAAGACCCACCATGAGTCAGGTGGTCGAGACGCTTCTCCGCCCCGAACGTGGAAACAATCATCACTACTAA 2403 0.4561 MDAPVLLLLLTLLLSSPLPSSTLDSLSQGSSLSVGKPEQVLISQSGIFSAGFYPVGDNAYCLAIWFTKPSYDGKHTAVWMANRNQPVNGNFSKLSLLESGDLILTDAGRFIVWTIKRVGISPVQLHLFNTGNLVLRTSDGVIQWQSFDSPTDTLLPHQPLTRNTRLVSSRTKTNFFSGFYKLYFDNNNVLSLVFDGRDASSIYWPPSWLVSWQAGRSAYNSSRTALLDNFGYFSSSDDFKFQSSDFGERVQRRLTLDIDGNLRLYSFEERRNKWVVTWQAITLQCNIHGICGPNSICTYVPGSGSGRRCSCIPGYEMKNRTDRTYGCIPKFNLSCDSQKVGFLLLPHVEFYGYDYGYYPNYTLQMCEKLCLEICGCIGYQYSYNSDVYKCYPKRLLLNGYRSPSFVGHIYLKLPKASLLSYEKPVKEFMLDCSGNRSEQLVRSYAKAHENEVLKFILWFACAIGAVEMVCICMVWCFLMKAQQNTSTDPPGYILAATGFRKFTYTELKKATRGFSEEIGRGGGGVVYKGVLSDHRVAAIKQLSGANQGESEFLAEVSTIGRLNHMNLIEMWGYCFEGKHRLLVYEYMEHGSLAQNLTSNTLDWQKRFDIAVGTAKGLAYLHEECLEWVLHCDVKPQNILLDVNYQPKVADFGLSKLQNRGEINNSRLSRIRGTRGYMAPEWVLNLPITSKVDVYSYGIVVLEMVTGRRSASMAIHGTDGIGERQSLVAWVKGKMNGATAVASWMKEILDPSMEGEYDMGEMEILVAVALQCVELDKDERPTMSQVVETLLRPERGNNHHY* 801
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0788 800 PIRSF SRK 1 798 IPR024171 GO:0004674
Vvi18g0788 800 Gene3D Phosphorylase Kinase; domain 1 478 586 - -
Vvi18g0788 800 ProSitePatterns Protein kinases ATP-binding region signature. 518 540 IPR017441 GO:0005524
Vvi18g0788 800 FunFam Serine/threonine-protein kinase 587 797 - -
Vvi18g0788 800 FunFam S-receptor-like serine/threonine-protein kinase 480 586 - -
Vvi18g0788 800 ProSitePatterns Serine/Threonine protein kinases active-site signature. 628 640 IPR008271 GO:0004672|GO:0006468
Vvi18g0788 800 SUPERFAMILY alpha-D-mannose-specific plant lectins 59 193 IPR036426 -
Vvi18g0788 800 Gene3D - 20 149 IPR036426 -
Vvi18g0788 800 CDD PAN_AP_plant 331 414 - -
Vvi18g0788 800 FunFam Putative receptor protein kinase ZmPK1 20 149 - -
Vvi18g0788 800 CDD EGF 285 320 - -
Vvi18g0788 800 SMART serkin_6 512 790 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g0788 800 SUPERFAMILY Protein kinase-like (PK-like) 488 789 IPR011009 -
Vvi18g0788 800 Pfam Protein kinase domain 515 787 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g0788 800 PANTHER OS07G0415500 PROTEIN 6 790 - -
Vvi18g0788 800 Pfam S-locus glycoprotein domain 244 318 IPR000858 GO:0048544
Vvi18g0788 800 Pfam D-mannose binding lectin 76 167 IPR001480 -
Vvi18g0788 800 CDD B_lectin 34 150 IPR001480 -
Vvi18g0788 800 Gene3D Transferase(Phosphotransferase) domain 1 587 799 - -
Vvi18g0788 800 SMART blect_4 32 150 IPR001480 -
Vvi18g0788 800 ProSiteProfiles Bulb-type lectin domain profile. 23 148 IPR001480 -
Vvi18g0788 800 ProSiteProfiles Protein kinase domain profile. 512 800 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0788 Vvi-Chr18 8166275 8168677 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0788 502 789 Trihelix Transcription Factor Family AT5G38560 42.177 3.02e-67 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Vvi18g0788 Pkinase 1e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0788 - - vvi:100257449 1571.99