Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0784 ATGGATGCGCCAGTTCTTTTGCTTCTTCTCACTCTGCTTCTATCTTCTCCACTTCCATCGTCCACCCTCGACAGTTTGAGTCAAGGCTCATCCCTCTCAGTTGGGAAGCCTGAACAAGTTTTGATTTCACAAAGTGGAATCTTCTCAGCTGGCTTCTACCCCGTCGGTGATAATGCTTATTGTCTTGCCATATGGTTCACCAAACCATCCTACGAAGGCAAACATATCGTTGTTTGGATGGCAAACCGAAACCAACCAGTTAATGGGAATTTCTCAAAGCTTTCCCTGCTAAAAAGTGGTGATCTTATCTTAACAGATGCTGGGCGGTTCATAGTTTGGACCATAAAGAGGGTTGGGATTTCTCCGGTGCAATTACACCTCTTCAACACTGGTAACCTTGTGCTGCGTACCTCGGATGGTGTTATTCAATGGCAAAGTTTCGATTCACCAACAGATACCCTTCTCCCTCACCAACCACTCACCAGAAATACGAGGCTTGTCTCTTCAAGAACCAAAACCAACTTTTTCCCAGGGTTTTATTATTTCTATTTTGACAACAATAATGTCCTCATTCTTGTCTTCGATGGGCCAGACGCTTCAAGCATTTACTGGCCCCCATCGTGGATGGAAAACTGGCAGGCGGGAAGATCGGCATACAACAGCAGCAGAATTGCATTACTAGATTACTTTGGCTGTTTTTCCTCAACCGACGATTTTGGGTTTCAGTCCTCGGATTTTGGTGAGAAAGTCCAAAGAAGATTGACCCTGGATATTGATGGCAACTTACGATTATACAGTTTTGAGGAAGGGAGAAATAAGTGGGTTGTTACTTGGCAAGCCATCACGCTACAATGCAACATCCATGGAATATGCGGACCCAACAGTATTTGTACCTATGTGCCTGGTTCTGGGAGTGGAAGGAGATGCTCTTGCATACCTGGATATGAGATGAAAAATCGCACTGACCGAACTTATGGATGCATACCAAAATTCAATCTTTCTTGCGACTCACAGAAGGTTGGTTTCCTCCTACTCCCACACGTTGACTTCTACGGCTATGATTATGGCTATTACCCTAATTACACCTTAAAGATGTGTGAAAAACTGTGCTTGGAAATATGTGGCTGCATAGGATTTCAATACAGCTATACTTCGGATGTTTATAAATGTAATCCTAAGCGGCTGTTGCTCAACGGATACCGCTCGCCTAGTTTTGTAGGACATATATATCTAAAATTGCCTAAAGCTAGTCTTCTTTCCTATGAAAAACCGGTTAAGGAATTCATGTTAGATTGCTCAGGCAACCGCTCAGAGCAGCTAGTAAAATCTTATGCAAAAGCCCACGAAAATGAAGTGTTATTAAAGTTCATCCTCTGGTTTGCGTGCGCAATTGGAGCAGTTGAGATGGTTTGCATCTGTATGGTGTGGTGTTTCTTGATGAAGGCCCAGCAAAACACCAGTACAGATCCTCCAGGCTACATTTTAGCTGCCACGGGATTCAGAAAATTCACCTATACTGAGCTGAAGAAAGCAACACGGGGTTTCAGCGAGGAGATTGGAAGAGGAGGAGGTGGGGTTGTATATAAAGGTGTCTTGTCAGACCACCGAGTGGCAGCCATCAAGCAGCTCAGTGGAGCTAACCAAGGAGAATCTGAATTCTTGGCAGAAGTAAGTACCATTGGGAGGTTTAACCACATGAACTTGATAGAGATGTGGGGTTATTGCTTTGTGGGGAAGCACAGGCTCTTGGTTTATGAATACATGGAGCATGGATCACTAGCACAAAACCTCACTTCCAATACACTTGATTGGCAGAAGAGGTTCGATATTGCGGTGGGCACAGCAAAAGGCCTGGCTTATTTACACGAAGAGTGCTTGGAGTGGGTTCTACACTGCGATGTGAAGCCTCAAAACATACTCCTAGACGTTAATTGTCAGCCAAAAGTGGCAGACTTCGGCCTGTCAAAGTTACAGAACAGAGGAGGAATCAACAATTCGAGATTGTCGAGGATCAGAGGAACAAGAGGTTACATGGCTCCAGAATGGGTTTTGAACCTCCCCATCACCTCCAAAGTAGACGTTTATAGCTATGGTATTGTGGTTCTGGAGATGGTTACCGGCCGAAGGAGTGCTTCAATGGCCATCCACGGTACAGATGGCATAGGGGAACGTCAGAGTTTGGTGGCATGGGTGAAAGGGAAGATGAATGGAGCAACTGCAGTTGCTTCGTGGATGAAAGAAATCCTAGACCCGTCGATGGAAGGCGAATATGACATGGGTGAGATGGAAATTCTAGTAGCAGTGGCTTTGCAATGTGTGGAATTGGACAAGGATGAAAGACCCACCATGAGTCACGTGGTCGAGACGCTTCTCCGCCCTGAACGTGGAAACAATCTTCACTACTAA 2406 0.4514 MDAPVLLLLLTLLLSSPLPSSTLDSLSQGSSLSVGKPEQVLISQSGIFSAGFYPVGDNAYCLAIWFTKPSYEGKHIVVWMANRNQPVNGNFSKLSLLKSGDLILTDAGRFIVWTIKRVGISPVQLHLFNTGNLVLRTSDGVIQWQSFDSPTDTLLPHQPLTRNTRLVSSRTKTNFFPGFYYFYFDNNNVLILVFDGPDASSIYWPPSWMENWQAGRSAYNSSRIALLDYFGCFSSTDDFGFQSSDFGEKVQRRLTLDIDGNLRLYSFEEGRNKWVVTWQAITLQCNIHGICGPNSICTYVPGSGSGRRCSCIPGYEMKNRTDRTYGCIPKFNLSCDSQKVGFLLLPHVDFYGYDYGYYPNYTLKMCEKLCLEICGCIGFQYSYTSDVYKCNPKRLLLNGYRSPSFVGHIYLKLPKASLLSYEKPVKEFMLDCSGNRSEQLVKSYAKAHENEVLLKFILWFACAIGAVEMVCICMVWCFLMKAQQNTSTDPPGYILAATGFRKFTYTELKKATRGFSEEIGRGGGGVVYKGVLSDHRVAAIKQLSGANQGESEFLAEVSTIGRFNHMNLIEMWGYCFVGKHRLLVYEYMEHGSLAQNLTSNTLDWQKRFDIAVGTAKGLAYLHEECLEWVLHCDVKPQNILLDVNCQPKVADFGLSKLQNRGGINNSRLSRIRGTRGYMAPEWVLNLPITSKVDVYSYGIVVLEMVTGRRSASMAIHGTDGIGERQSLVAWVKGKMNGATAVASWMKEILDPSMEGEYDMGEMEILVAVALQCVELDKDERPTMSHVVETLLRPERGNNLHY* 802
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0784 801 SUPERFAMILY alpha-D-mannose-specific plant lectins 59 193 IPR036426 -
Vvi18g0784 801 PIRSF SRK 1 798 IPR024171 GO:0004674
Vvi18g0784 801 ProSiteProfiles Bulb-type lectin domain profile. 23 148 IPR001480 -
Vvi18g0784 801 FunFam Serine/threonine-protein kinase 588 798 - -
Vvi18g0784 801 CDD B_lectin 36 150 IPR001480 -
Vvi18g0784 801 CDD PAN_AP_plant 331 414 - -
Vvi18g0784 801 SUPERFAMILY Protein kinase-like (PK-like) 489 790 IPR011009 -
Vvi18g0784 801 SMART serkin_6 513 791 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g0784 801 CDD EGF 285 320 - -
Vvi18g0784 801 FunFam S-receptor-like serine/threonine-protein kinase 481 587 - -
Vvi18g0784 801 Pfam D-mannose binding lectin 77 167 IPR001480 -
Vvi18g0784 801 FunFam Putative receptor protein kinase ZmPK1 20 149 - -
Vvi18g0784 801 SMART blect_4 32 150 IPR001480 -
Vvi18g0784 801 Pfam S-locus glycoprotein domain 247 318 IPR000858 GO:0048544
Vvi18g0784 801 Gene3D Phosphorylase Kinase; domain 1 479 587 - -
Vvi18g0784 801 PANTHER OS07G0415500 PROTEIN 6 791 - -
Vvi18g0784 801 ProSiteProfiles Protein kinase domain profile. 513 801 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g0784 801 ProSitePatterns Protein kinases ATP-binding region signature. 519 541 IPR017441 GO:0005524
Vvi18g0784 801 ProSitePatterns Serine/Threonine protein kinases active-site signature. 629 641 IPR008271 GO:0004672|GO:0006468
Vvi18g0784 801 Gene3D - 20 148 IPR036426 -
Vvi18g0784 801 Pfam Protein kinase domain 516 788 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g0784 801 Gene3D Transferase(Phosphotransferase) domain 1 588 798 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0784 Vvi-Chr18 8135122 8137527 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0784 503 790 Trihelix Transcription Factor Family AT5G38560 41.837 5.10e-65 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Vvi18g0784 Pkinase 4.3e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0784 - - vvi:100254036 1584.31