Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0770 ATGACATTCCCGAGAGAAGAAATAGCAGAGCTATCAGCTAACAATCAGAAGAGTAGATCAGAAGCAGATAACAATGATTATGGGGACACTGGGGATGATGATTCAAAAGTGTGGCTTACCTTGGGGGTCGGCAGAAATGATGCTCTGATGGCTGGAAACAAGGAGTCTCAACCAGAATCTGCTTCCAACAAGGTCTTCTCATGCAACTTCTGCATGAGGAAATTCTTTAGTTCCCAAGCACTGGGTGGCCACCAGAATGCACACAAAAGGGAGAGAGGAGCAGTTAAAAGGTACCAATCTCAGAGGATGATGGGAATCATGGGTTTGCCCCCATGTAATCCATCTGTCCGATCACTGGGATTTCGGCCTCACTCACTTGTGCACAAACCATTTAGAGAAGCTCCAACTATGATGGCTCGATTCAGTGATGCTAGCAATGGGTTTGGTTTGCCCTGGACATCAGTGGTCCCTGAAGAAGCAACAAATTTAATATGGCCAGGAAGTTTTCGCATGAACTCTCAACCGCCCTACTGCAAACAACCATCAGACTACCCTCAACTCGACCTGGATCTCCGACTTTGA 582 0.4674 MTFPREEIAELSANNQKSRSEADNNDYGDTGDDDSKVWLTLGVGRNDALMAGNKESQPESASNKVFSCNFCMRKFFSSQALGGHQNAHKRERGAVKRYQSQRMMGIMGLPPCNPSVRSLGFRPHSLVHKPFREAPTMMARFSDASNGFGLPWTSVVPEEATNLIWPGSFRMNSQPPYCKQPSDYPQLDLDLRL* 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0770 193 ProSitePatterns Zinc finger C2H2 type domain signature. 68 88 IPR013087 -
Vvi18g0770 193 PANTHER ZINC FINGER PROTEIN 4-LIKE 1 193 - -
Vvi18g0770 193 MobiDBLite consensus disorder prediction 1 33 - -
Vvi18g0770 193 ProSiteProfiles Zinc finger C2H2 type domain profile. 66 93 IPR013087 -
Vvi18g0770 193 SUPERFAMILY beta-beta-alpha zinc fingers 62 92 IPR036236 -
Vvi18g0770 193 Gene3D Classic Zinc Finger 47 106 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0770 Vvi-Chr18 8000360 8000941 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0770 39 190 C2H2 Transcription Factor Family AT1G24625 37.975 6.69e-22 87.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0770 - - vvi:100854834 394.045