Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0769 ATGGCGGATCAGGAGAACTCCGTGCGGATCACAAGGGCAGCCAAGAAGAGGGCCGCTGCTGCCATGGCCGCGTCAGATTCACTGCAGCTTCCGCCCAACAAGAAGCGTGTGGTCTTGGGGGAGCTTCCCAATTTATCCAACGTCGCTGCCACTCCGGCTGCTGTGCCCGCTTCTGGAGCCCAGAAGCAGAAGTTTAGGCCCAAGAAGAAGGAGAAGGTGAAGGCGGCGGTGGTGGCGCCTGATGTTGGTGCCAAGTCGGATGATCCGCAGATGTGTGGGCCTTACGCTACTGACATTTACGAGTATCTTCACAGCATGGAGATGGAGCCAAAGAGAAGACCATTGCATGATTACATTGAGAAGGTTCAGAAGGATGTGAGTCACAATATGAGGGGGATTTTGGTGGATTGGTTGGTGGAGGTTGCAGAGGAATACAAGCTTGCGTCTGACACTTTGTATCTGACCATTTCTTACATTGATAGATTCTTATCTTCAAAAGCTCTCAACAGGCAGAGGCTCCAGCTATTGGGTGTTTCTTCAATGCTCATTGCTGCAAAGTATGAAGAGATCAGCCCTCCACACGTGGAAGATTTTTGTTACATAACAGACAATACATACACCAAAGAGGAGGTGGTGAAGATGGAGGCTGATATTCTAAAATCTCTTAATTTTGAAATGGGCAATCCCACAATAAAGACATTTCTCAGACGGTTCACCAGGATTGCTCAAGAAAATTACAAAACTCCCAATTTGCAGTTGGAGTTTCTGGTTTATTACCTTGCAGAGCTAAGTTTGTTGGATTATGGATGTGTGAAATTCTTACCTTCCATGGTAGCTGCATCAGTTATATTTCTTTCAAGATTCACACTCCGTCCAAAGACACATCCTTGGTGTTCAAGTCTGCAACATCATTCTGGATATAAACCATCAGAGCTGAAGGAATGTGTTCTAATTATACATGATTTACAACTGAGTAGAAGAGGAGGTTCTTTGGTGGCAGTAAGAGAGAAATACAAGCAGCATAAGTTCAAATGCGTGGCAACATTGTCTTCCCCCTCAGTGATACCGGTTTCTTATTTTGAAGATATTAAAGAATGA 1098 0.4526 MADQENSVRITRAAKKRAAAAMAASDSLQLPPNKKRVVLGELPNLSNVAATPAAVPASGAQKQKFRPKKKEKVKAAVVAPDVGAKSDDPQMCGPYATDIYEYLHSMEMEPKRRPLHDYIEKVQKDVSHNMRGILVDWLVEVAEEYKLASDTLYLTISYIDRFLSSKALNRQRLQLLGVSSMLIAAKYEEISPPHVEDFCYITDNTYTKEEVVKMEADILKSLNFEMGNPTIKTFLRRFTRIAQENYKTPNLQLEFLVYYLAELSLLDYGCVKFLPSMVAASVIFLSRFTLRPKTHPWCSSLQHHSGYKPSELKECVLIIHDLQLSRRGGSLVAVREKYKQHKFKCVATLSSPSVIPVSYFEDIKE* 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0769 365 FunFam Mitotic cyclin 6 114 214 - -
Vvi18g0769 365 SUPERFAMILY Cyclin-like 229 354 IPR036915 -
Vvi18g0769 365 CDD CYCLIN_AtCycA_like_rpt1 88 225 - -
Vvi18g0769 365 Gene3D - 98 348 - -
Vvi18g0769 365 Pfam Cyclin, N-terminal domain 98 226 IPR006671 -
Vvi18g0769 365 CDD CYCLIN_AtCycA-like_rpt2 229 343 - -
Vvi18g0769 365 PANTHER CYCLINS 70 346 IPR039361 -
Vvi18g0769 365 FunFam Cyclin A1 216 348 - -
Vvi18g0769 365 Gene3D - 112 227 - -
Vvi18g0769 365 SUPERFAMILY Cyclin-like 87 226 IPR036915 -
Vvi18g0769 365 PIRSF Cyclin_A_B_D_E 1 359 IPR046965 GO:0016538|GO:0044772
Vvi18g0769 365 Pfam Cyclin, C-terminal domain 229 351 IPR004367 -
Vvi18g0769 365 ProSitePatterns Cyclins signature. 131 162 IPR006671 -
Vvi18g0769 365 SMART Cyclin_C_2 229 352 IPR004367 -
Vvi18g0769 365 SMART cyclin_7 233 321 IPR013763 -
Vvi18g0769 365 SMART cyclin_7 136 220 IPR013763 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0769 Vvi-Chr18 7996302 7998510 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0769 1 363 Core Cell Cycle Gene Families AT1G47210 60.215 3.90e-164 462
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0769 K06627 - vvi:100250548 675.241