Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0766 ATGAAACCAGCATACATGGGTTTCATTTTAATTCTTCACTATGCTGTTTTTGCCGTTCTTCTGTCCTCCCTAAGCTCGTTTCGTATTGTGTGTTCAGCTTCCTTGAGCATTAACACCGACAAGGAGGCATTGCTTTCATTTAAATATCATTTGAGCAGCGAATCCTCGGAGACTCTTTCTTCATGGAATGTTAACAACTCCAGCCCATGTAACTGGACTGGTGTTTTATGCAATGAGTCCAGGGATAGGGTCATTGGCCTTGATCTCTCAGGCTTTGGGCTAACAGGCACCATAAGCCCGCATATTGGGAATCTCTCCTTCCTTAGCTCTCTTGAGTTACAGGATAACCAATTGACAGGAACCATTCCTGATCAGGTTGGTGACCTTTCCCGCTTGAGCGTCTTGAACATGAGCTCTAACCACATCAGAGGTGCGATACCACTCAACATAACTATGTGTTTAGAGCTCGAGATCCTTGACTTGAAGGAAAATGAAATCTCGGGTACAATTCCTGCAGAGCTCGGCCGTCTCAGAAATTTGGAAATCCTCAAACTGGGTAGCAATCAGCTTGTTGGTGATATTCCGCCTTCTATCAGCAACCTTTCCTCACTGGACACGCTAAGTTTGGGCACCAACAATTTGGGTGGCAGGATTCCTGATGATTTGGGTCGCCTTCAGAATTTGAAAGAACTCGATCTAACCATTAATCAGCTGGAGGGCACTGTCCCTTCATCCATATACAACATCACTTCGCTGGTTAATTTGGCTGTGGCGTCCAACAACCTCTGGGGCGAAATTCCTAGTGATGTTGGAGATAGGCTTCCAAACCTTCTCATCTTCAATTTCTGCATCAATAAATTCACTGGTGGAATTCCTGGATCTTTGCACAATCTCACCAACATTAATGTCATTCGGATGGCACACAACCTTTTGGAAGGATCAGTGCCATCAGGTCTGGGGAATCTTCCGCAGCTGCGTATGTACAATATTGGGTACAATCGGATTAAAAGCTCAGGTGATCAGGGTCTCGATTTCATTACTTCTTTGACAAACAGTACCCATCTTAACTTCCTTGCCATTGATGGCAATTTTCTGGAGGGTGTGATTCCAGAATCTATTGGTAATCTTTCTACTTCTCTCGCAAGTTTACATATGGGTCAGAACAAGATCTACGGTAGTATACCACCCTCAATCAGTCATCTTAGCAGCTTGGCTTTGCTTAATTTGAGCCATAATCTTATTTCTGGTGAAATCCCACCAGAAATTGGTGAACTTGGGGAGATGCAGGAATTGTATTTGGCTTCCAATAATATCTCCGGCAGAATTCCAAGCTCCCTTGGCAATCTCCGACAATTGAGTCAGCTTGATTTATCTAGCAATAGATTGGTGGGAGGAATACCCACAAATTTTTCTAACTTCCAGAGATTGCTCTCAATGGATCTATCCAATAACAGGCTCAATGAAAGCATACCCAAGGAGATTCTCGGCCTTCCCGGTTTGAGCACTCTGCTGAATCTATCCAAGAACTCTCTGACTGGACCCTTGCCTCAAGAAGTTGAAGCACTCGAAAGTGTTGTCACAATTGACCTCTCTCACAACCATTTATCTGGAAGCATTCCCGAATCCATTAGCAAATGTAAGAGCTTAGAGGAATTGTTCATGGCAAACAACAAATTCTCAGGTTCTATTCCAGATACTCTGGGGGAAGTGAGGGGCTTGGAAATACTTGACCTCTCTACAAACCAACTCACTGGCTCAATACCCAGCAGTCTCCAAGAACTTCAGGCCCTTCAATTGCTAAACCTCTCTTTCAACAACCTAGAAGGAGTTGTTCCCAGCGAGGGAGTCTTTAAAAATCTCTCCCGTGTTCATATTGAAGGAAACTCAAAGCTTTGCTTGAATTTGGCCTGTACGAAAGGCCATGGAAGAAGATTTGCTGTCTTTCATATTATACTTATAATCGCTTCAGCGATAGCAATATGCTTGGCAGTCGGTGTGTTAGCCTATCTAAAGAAAAGCAAAGCAAAGAAATTGCCGATCACGTCGGACTCATTTAAAGTGCTGCACCAAGTGGTCTCTTATGATGATCTACGCATGGCAACTGGGAATTTCAACCAGCAAAATCTGATCGGGAAAGGGAGCTTCGGGTCAGTTTACAAAGGGTATCTTACAGAAGGTACTGCAGTCGCAATCAAGGTGCTTGACATCCAAAGAAATGGATCATGGAAGAGTTTCTTCGCCGAGTGTGAGGCTTTGAGGACCGTAAGGCACCGGAATCTTGTGAAGCTGATCACCTCATGCTCCAGTTTGGACTTTAAGAATGTAGAATTTCTGGCTCTGATTTATGATTTCATGCACAATGGGAGCTTGGAAGACTGGATCAAGGGAACGAGAAGGCACGCAAGTGGATGTGCGCTGAATCTCGTAGAGAGATTGAAGATAGCCATTGACGTTGCTTGCGCCATGGATTACCTGCACCATGACTCTGAAACTCCCATCGCCCACTGTGATCTGAAGCCAAGCAACGTGCTGTTGGACAAAGACATGACCGCCAAGGTAGGGGACTTCGGGTTGGCCAGGTTACTGATGGACAGAGCGGCCGATCAACAGTCAATAGCCTCCACACACGGTCTCAGGGGTTCCATAGGCTACATACCTCCAGAGTACGGACTGGGAGGGAAACCAACAACATCCGGAGATGTGTACAGCTATGGAGTTATGTTGTTAGAGATGTTTACAGGGAAAAGCCCAACCCATGAGAGTTTCCTCGGGGGACTGACCTTAGCCCAGTGGGTTCAATCAGCTTTCCCAACAAACGTAAGGCAAGTGGTGGACCCTGAGCTGCTGCTTCCCACCGGAGCTCTTCAACATGAAGGACACCCAATAAGCGAGGAAGTGCAGCACGAATGTCTGATTGCTGTCATTGGGGTTGCGCTATCTTGCACCGTGGACTCTTCAGATAGACGCATCAGCTCCAGAGATGCTCTCTCCCAACTCAAAACTGCTGCCAAGGCCCTTCTCAAACCTACCCTCGATGATATGGAGGAAGGAGCTTCACCCCATTGTGTTGTTGATGTTTAG 3081 0.458 MKPAYMGFILILHYAVFAVLLSSLSSFRIVCSASLSINTDKEALLSFKYHLSSESSETLSSWNVNNSSPCNWTGVLCNESRDRVIGLDLSGFGLTGTISPHIGNLSFLSSLELQDNQLTGTIPDQVGDLSRLSVLNMSSNHIRGAIPLNITMCLELEILDLKENEISGTIPAELGRLRNLEILKLGSNQLVGDIPPSISNLSSLDTLSLGTNNLGGRIPDDLGRLQNLKELDLTINQLEGTVPSSIYNITSLVNLAVASNNLWGEIPSDVGDRLPNLLIFNFCINKFTGGIPGSLHNLTNINVIRMAHNLLEGSVPSGLGNLPQLRMYNIGYNRIKSSGDQGLDFITSLTNSTHLNFLAIDGNFLEGVIPESIGNLSTSLASLHMGQNKIYGSIPPSISHLSSLALLNLSHNLISGEIPPEIGELGEMQELYLASNNISGRIPSSLGNLRQLSQLDLSSNRLVGGIPTNFSNFQRLLSMDLSNNRLNESIPKEILGLPGLSTLLNLSKNSLTGPLPQEVEALESVVTIDLSHNHLSGSIPESISKCKSLEELFMANNKFSGSIPDTLGEVRGLEILDLSTNQLTGSIPSSLQELQALQLLNLSFNNLEGVVPSEGVFKNLSRVHIEGNSKLCLNLACTKGHGRRFAVFHIILIIASAIAICLAVGVLAYLKKSKAKKLPITSDSFKVLHQVVSYDDLRMATGNFNQQNLIGKGSFGSVYKGYLTEGTAVAIKVLDIQRNGSWKSFFAECEALRTVRHRNLVKLITSCSSLDFKNVEFLALIYDFMHNGSLEDWIKGTRRHASGCALNLVERLKIAIDVACAMDYLHHDSETPIAHCDLKPSNVLLDKDMTAKVGDFGLARLLMDRAADQQSIASTHGLRGSIGYIPPEYGLGGKPTTSGDVYSYGVMLLEMFTGKSPTHESFLGGLTLAQWVQSAFPTNVRQVVDPELLLPTGALQHEGHPISEEVQHECLIAVIGVALSCTVDSSDRRISSRDALSQLKTAAKALLKPTLDDMEEGASPHCVVDV* 1027
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0766 1026 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 274 997 - -
Vvi18g0766 1026 Gene3D Ribonuclease Inhibitor 196 344 IPR032675 -
Vvi18g0766 1026 Gene3D Transferase(Phosphotransferase) domain 1 785 1015 - -
Vvi18g0766 1026 FunFam Inactive leucine-rich repeat receptor-like protein kinase 347 640 - -
Vvi18g0766 1026 Pfam Protein kinase domain 705 919 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g0766 1026 SUPERFAMILY L domain-like 378 632 - -
Vvi18g0766 1026 Gene3D Ribonuclease Inhibitor 36 195 IPR032675 -
Vvi18g0766 1026 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 785 1011 - -
Vvi18g0766 1026 ProSiteProfiles Protein kinase domain profile. 704 1011 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g0766 1026 Gene3D Phosphorylase Kinase; domain 1 685 784 - -
Vvi18g0766 1026 SMART serkin_6 704 1007 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g0766 1026 FunFam Receptor protein kinase CLAVATA1 36 195 - -
Vvi18g0766 1026 CDD STKc_IRAK 710 1000 - -
Vvi18g0766 1026 ProSitePatterns Serine/Threonine protein kinases active-site signature. 833 845 IPR008271 GO:0004672|GO:0006468
Vvi18g0766 1026 SMART LRR_typ_2 105 129 IPR003591 -
Vvi18g0766 1026 SMART LRR_typ_2 449 472 IPR003591 -
Vvi18g0766 1026 SMART LRR_typ_2 401 425 IPR003591 -
Vvi18g0766 1026 SMART LRR_typ_2 522 546 IPR003591 -
Vvi18g0766 1026 SMART LRR_typ_2 594 619 IPR003591 -
Vvi18g0766 1026 SMART LRR_typ_2 570 593 IPR003591 -
Vvi18g0766 1026 SMART LRR_typ_2 201 225 IPR003591 -
Vvi18g0766 1026 SMART LRR_typ_2 473 497 IPR003591 -
Vvi18g0766 1026 SMART LRR_typ_2 177 200 IPR003591 -
Vvi18g0766 1026 Pfam Leucine rich repeat N-terminal domain 38 78 IPR013210 -
Vvi18g0766 1026 ProSitePatterns Protein kinases ATP-binding region signature. 710 732 IPR017441 GO:0005524
Vvi18g0766 1026 Pfam Leucine rich repeat 548 607 IPR001611 GO:0005515
Vvi18g0766 1026 SUPERFAMILY Protein kinase-like (PK-like) 685 999 IPR011009 -
Vvi18g0766 1026 SUPERFAMILY RNI-like 87 391 - -
Vvi18g0766 1026 Gene3D Ribonuclease Inhibitor 345 642 IPR032675 -
Vvi18g0766 1026 FunFam LRR receptor-like serine/threonine-protein kinase EFR 675 784 - -
Vvi18g0766 1026 SMART LRR_sd22_2 522 545 - -
Vvi18g0766 1026 SMART LRR_sd22_2 177 203 - -
Vvi18g0766 1026 SMART LRR_sd22_2 225 251 - -
Vvi18g0766 1026 SMART LRR_sd22_2 570 596 - -
Vvi18g0766 1026 SMART LRR_sd22_2 377 403 - -
Vvi18g0766 1026 SMART LRR_sd22_2 449 475 - -
Vvi18g0766 1026 FunFam Putative leucine-rich repeat receptor-like protein kinase family protein 235 342 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0766 Vvi-Chr18 7977179 7980354 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0766 39 1010 Receptor kinase-like Gene Family AT3G47570 44.233 0.0 759
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Vvi18g0766 Pkinase 1.5e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0766 - - vvi:100259050 1917.12