Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0765 ATGGGGAGGGTGAAGCTTCAAATCAAGAAAATTGAGAACACAACGAATAGGCAGGTCACCTTCTCAAAAAGGAGAAATGGGCTTATCAAGAAAGCTTATGAACTTTCTGTTCTCTGTGATGTTGATGTGGCTCTCATCATGTTTTCCCCATCTGGAAGAGTCAGTCTCTTCTCTGGAAATAAGAGCATCGAAGAGATCATGACTCGGTATGTAAATCTTCCTGAACATGAACGAGGCCGGCTGCATAATCAAGAGTTCCTACAAAGGGCTCTTGGTAAGTTGAAAAGTGAAGCTAATCGAACCTATCAAGCTGCAGCCAGCCCGATGAGTACAGATTCCCAACTCGAGGAGATTCAACAAGAGATCCTCAAATATAAGTCCCAGTTGGATGATATGCAGAAACGACTAAGGATATTTGAAGGTGATCCTTCTGAGATCACCACAGTGAGAGAGGTTGAGTACCGGGAGCAGATCCTTGAGGAAACCTTGAAACAGGTTCGGTTTCAGAAGCAAGCTTTGGAGGAAAAGTATAATACTACAGAGCCGCAGCCAACTACCCAAGTGCATCTGCCTCCGGAGACTGCAAATGTAAATGGTTTTATCTCAGGAAATCCAAACAATATGTTGGATTGGCTCCCACCAAGAGACCCACAAGTGCAGATCCTGAATTTTTTGGATTCCAACGGTCTCCTCCCAATGAGAGAGCAACCACAGCGCATGGTTGAAATCTTACCGCCATCTTCAACCCTCCTTCCAGGACAAAACATTCATCTTGAGGATCACATGAGCCCGAGCAGCGGGATGGAGGAAGATAATAATGTGCAGCGTCCTCAGTTTGGCCCAGCTATCGATGTAAACCTTTCTCCGTGGGCTGAATTTTATCCGACAGCAGGGAATGGCTCCTATCCTGCAGCACAGCCCCGGGGACCGGCACTACTTGAACTGTTTCTGTCTCAGTTCACACCATGA 969 0.4634 MGRVKLQIKKIENTTNRQVTFSKRRNGLIKKAYELSVLCDVDVALIMFSPSGRVSLFSGNKSIEEIMTRYVNLPEHERGRLHNQEFLQRALGKLKSEANRTYQAAASPMSTDSQLEEIQQEILKYKSQLDDMQKRLRIFEGDPSEITTVREVEYREQILEETLKQVRFQKQALEEKYNTTEPQPTTQVHLPPETANVNGFISGNPNNMLDWLPPRDPQVQILNFLDSNGLLPMREQPQRMVEILPPSSTLLPGQNIHLEDHMSPSSGMEEDNNVQRPQFGPAIDVNLSPWAEFYPTAGNGSYPAAQPRGPALLELFLSQFTP* 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0765 322 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vvi18g0765 322 Coils Coil 115 135 - -
Vvi18g0765 322 CDD MADS_MEF2_like 2 75 IPR033896 GO:0000977|GO:0045944
Vvi18g0765 322 Gene3D - 13 94 IPR036879 GO:0003677|GO:0046983
Vvi18g0765 322 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 55 IPR002100 GO:0003677|GO:0046983
Vvi18g0765 322 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 195 - -
Vvi18g0765 322 Coils Coil 156 176 - -
Vvi18g0765 322 SUPERFAMILY SRF-like 2 82 IPR036879 GO:0003677|GO:0046983
Vvi18g0765 322 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Vvi18g0765 322 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vvi18g0765 322 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vvi18g0765 322 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vvi18g0765 322 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vvi18g0765 322 FunFam Agamous-like MADS-box protein AGL66 isoform A 14 79 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0765 Vvi-Chr18 7968590 7971054 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0765 1 213 Type I MADS-box Gene Family AT1G22130 44.053 6.89e-52 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Vvi18g0765 SRF-TF 7.8e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0765 - - vvi:100253913 645.966