Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0764 ATGTACAGACCAGTGTTGGCACCTCCCAGTCGTCATCAGGGGTGGCAAGAGTCCACCGCTCGCTTGCTTGCTCCTTTAACTCTATGGCTATGTGTCACGGTCAGCATTCGATATGGGTATTACGGGAACTGCCGAATGGTGCTTGGACCAAGCTCCTCCCGCTTGATGAAGGCAAGTTCCCTTTTTGTAAAGCAGATTGAAGTGAAGGACGATGATAAAAAGGGGGTTCTTCTTTACGGGTTTGCGGAGAAGCCAGAATTGAGTGTCGAAACAAATTGGAGCGTCTCCAATTATCTCATCGTTGGATCCTATGGCCGAAAGGGATTCTCCTTGTGGTTGAATAAAGGTTCGAGTATCCGTGTCAGATGGGAAGCTCAACCTAGTAGTTTGAGTGATCTGCAAGTGTTTCTAATTAAAGGGGAACGAAAATACGAAACTTTGCTGCCGAATCCAACAAATTCCCCTGCTGCCTTTCCCTTCCATGAATCAACAAATGGGAGAGAAGCCGAATACACAATCCTGGAAGACAATAGATACTATGTAGGCATCATAAACGCCAATCGTAAAAGCGTCATAATGACATTGAATGTTAATGTTACATCCAAGATGTACGATATCACTAAGGCAAAGAGCATGTGTTCAACAATAAAGGGATCCTGTCGTCTCAATCTTCTCTTCCCCAATACTCAATTTGTCATACTAACCACACCCAACAATGGAGATCTTGCTGGATGGTACATTGAGCTTTCTTTTGTGGCTCGTGTGGTAACCTACGTTTCGATTTTAGGATTTGTCGTAATTATTATATTTCTGGTATTGAAATACCTTGGAGCCTGCGAGGGAGACAACGAAGTACATGTAGAGGAGATAACGCCTCGGGAAGTAACTGAAACTCACCCCTTAATGCCAGAGAAGCTATTTCGGCTCACCTATGGAACAGGTGAAGAAGATGCAGAATCAGGAATGTCTAGCAGCTCCTCAGAGGATTTGTATGATGGGAAGATTTGCACTATTTGCTACGATGAGCCACGGAACTGCTTCTTTGTTCCCTGTGGTCATTGTGCCACCTGCTATGACTGTGCTAAAAGGATTATAGAAGGGGAGAACAAGGTTTGTCCAATATGTCGAAGGTTCATTCACAAAGTAAGAAAATTGTTCACTCCTTAG 1167 0.4404 MYRPVLAPPSRHQGWQESTARLLAPLTLWLCVTVSIRYGYYGNCRMVLGPSSSRLMKASSLFVKQIEVKDDDKKGVLLYGFAEKPELSVETNWSVSNYLIVGSYGRKGFSLWLNKGSSIRVRWEAQPSSLSDLQVFLIKGERKYETLLPNPTNSPAAFPFHESTNGREAEYTILEDNRYYVGIINANRKSVIMTLNVNVTSKMYDITKAKSMCSTIKGSCRLNLLFPNTQFVILTTPNNGDLAGWYIELSFVARVVTYVSILGFVVIIIFLVLKYLGACEGDNEVHVEEITPREVTETHPLMPEKLFRLTYGTGEEDAESGMSSSSSEDLYDGKICTICYDEPRNCFFVPCGHCATCYDCAKRIIEGENKVCPICRRFIHKVRKLFTP* 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0764 388 PANTHER OS05G0521000 PROTEIN 22 387 - -
Vvi18g0764 388 Pfam Zinc finger, C3HC4 type (RING finger) 334 382 - -
Vvi18g0764 388 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 312 387 IPR013083 -
Vvi18g0764 388 SMART ring_2 336 375 IPR001841 -
Vvi18g0764 388 SUPERFAMILY RING/U-box 327 382 - -
Vvi18g0764 388 Pfam Domain of unknown function (DUF4793) 169 272 IPR032010 -
Vvi18g0764 388 Pfam Domain of unknown function (DUF4792) 77 143 IPR032008 -
Vvi18g0764 388 ProSiteProfiles Zinc finger RING-type profile. 336 376 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0764 Vvi-Chr18 7962590 7964448 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0764 307 385 C3H Transcription Factor Family AT3G06140 36.709 3.18e-08 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0764 - - vvi:100248821 774.237