Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0760 ATGATGACTCCTGAGCCATCACAGCAAGAACCGCCCAACGGAGACGGCAAAGATGAGGAAGCAAATCGTCTCTTGCCCTCAAAATCTCCTTCGTCACTGTCGCCATCATCGGACGAGGAGGAGGTCGCGTACGAATCTAGAGAGAAAATATCAATCGTCGATTTGGAAGGCGAAACCCTAGAGTCCCTCGATGCCTCCGCGACTCCGCCCTTCTCGTGGAAGAAGCTGTGGCTATTCACGGGACCAGGGTTCCTGATGAGCATTGCGTTCCTAGATCCCGGAAACCTTGAAGGGGATCTTCAGGCGGGAGCCATTGCAGGGTACTCGCTGCTATGGCTATTGATGTGGGCGACGGTTATGGGGCTCTTGATCCAGTTATTGTCGGCGAGGGTTGGGGTGGCCACGGGGCGGCATCTTGCCGAGCTCTGTAGGGAAGAGTATCCGACATGGGCTGGGCGGTTGTTGTGGTTCATGGCGGAGTTGGCCTTGATCGGGGCTGATATCCAGGAGGTGATTGGTAGTGCCATTGCAATTAAGATTCTTAGCCGTGGATTTCTTCCGCTTTGGGCTGGAGTTGTAATTACTGCGTCCGATTGTTTTATCTTTTTGTTTCTTGAAAACTATGGAGTGAGGAAGTTGGAAGCTGTTTTTGCAGTTTTCATTGCAACAATGGGACTTTCATTTGCCTGGATGTTTGGTGATGCAAAGCCCAGTGGAAGGGAACTTCTGATAGGTGTTTTGGTTCCAAAACTTAGCTCAAAAACAATTCGGCAGGCAGTGGGAGTTGTTGGTTGTGTTATAATGCCTCATAATGTATTTTTGCATTCTGCTTTGGTACAGTCCAGGAAGATTGACCCCCACAGAAAAGGTCGGGTTCAAGAGGCACTCAACTACTATTCAATTGAGTCGACAGTTGCCCTTCTAATCTCTTTCATGATCAATTTGTTTGTGACAACTGTTTTTGCAAAGGGATTTTATGGTACTAAACAGGCCGATGGAATAGGCCTAGTAAATGCAGGGCAGTATCTTGAAGAGAAGTATGGGGGAGGTGTTTTCCCAATACTTTATGTCTGGGGTATTGGACTATTGGCAGCTGGACAGAGTAGTACCATAACTGGCACATATGCTGGGCAATTTATCATGGGAGGCTTTCTCAATCTCCGTCTGAAGAAATGGCTAAGGGCATTGATAACACGTAGTTTTGCTATTGTGCCTACTATGATTGTAGCTCTTGTTTTCAACAGATCTGAAGCTTCACTGGATGTTTTAAATGAATGGCTTAATGTACTTCAGTCAATGCAGATTCCTTTTGCACTTATTCCCCTTCTTACTTTAGTGTCCAAGGAACAGGTTATGGGTGTCTTCAAGGTTGGACCACTTTTAGAGAGAGTGGCGTGGACTGTGGCTGCCCTTGTAATAGTGATCAATGGGTATCTTCTGCTGGATTTCTTCATGGCTGAAGTTGATGGAGTGCTATTTGGTTTTCTGGTCTGTGCTGGCACAGCTCTATATGTAGCATTTATTTTTTATCTTGTATCACATGGTGGTGTCCTTTCTTCTACTTGGTTCAGCTTAGTAACATCCAAGAGGTTTCCTTTCATTGGGAGTTGA 1611 0.4631 MMTPEPSQQEPPNGDGKDEEANRLLPSKSPSSLSPSSDEEEVAYESREKISIVDLEGETLESLDASATPPFSWKKLWLFTGPGFLMSIAFLDPGNLEGDLQAGAIAGYSLLWLLMWATVMGLLIQLLSARVGVATGRHLAELCREEYPTWAGRLLWFMAELALIGADIQEVIGSAIAIKILSRGFLPLWAGVVITASDCFIFLFLENYGVRKLEAVFAVFIATMGLSFAWMFGDAKPSGRELLIGVLVPKLSSKTIRQAVGVVGCVIMPHNVFLHSALVQSRKIDPHRKGRVQEALNYYSIESTVALLISFMINLFVTTVFAKGFYGTKQADGIGLVNAGQYLEEKYGGGVFPILYVWGIGLLAAGQSSTITGTYAGQFIMGGFLNLRLKKWLRALITRSFAIVPTMIVALVFNRSEASLDVLNEWLNVLQSMQIPFALIPLLTLVSKEQVMGVFKVGPLLERVAWTVAALVIVINGYLLLDFFMAEVDGVLFGFLVCAGTALYVAFIFYLVSHGGVLSSTWFSLVTSKRFPFIGS* 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0760 536 Hamap Divalent metal cation transporter MntH [mntH]. 62 484 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vvi18g0760 536 NCBIfam Nramp family divalent metal transporter 81 450 - -
Vvi18g0760 536 MobiDBLite consensus disorder prediction 25 39 - -
Vvi18g0760 536 PANTHER SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER 54 513 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vvi18g0760 536 Pfam Natural resistance-associated macrophage protein 97 458 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vvi18g0760 536 PRINTS Natural resistance-associated macrophage protein signature 155 181 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vvi18g0760 536 PRINTS Natural resistance-associated macrophage protein signature 185 204 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vvi18g0760 536 PRINTS Natural resistance-associated macrophage protein signature 259 282 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vvi18g0760 536 PRINTS Natural resistance-associated macrophage protein signature 394 411 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vvi18g0760 536 PRINTS Natural resistance-associated macrophage protein signature 366 385 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vvi18g0760 536 PRINTS Natural resistance-associated macrophage protein signature 210 231 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vvi18g0760 536 PRINTS Natural resistance-associated macrophage protein signature 428 447 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vvi18g0760 536 NCBIfam metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family 74 452 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vvi18g0760 536 MobiDBLite consensus disorder prediction 1 41 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0760 Vvi-Chr18 7936167 7940390 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0760 18 514 Inorganic Solute Cotransporters AT1G47240 81.928 0.0 817
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0760 K21398 - vvi:100262579 1038.87