Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0750 ATGTTGAGGAAGTGTTGGAGGCAAGTGGAGAGAGTGTTGGGAAGGGGAGGCGGAGATGAGCTGCTGTGGCACATGGACTTGAAGCCTCATCCGTGTGGGGACTTGTCCATAGCCGTTGTTCAAGCCAATTCTTCTCTAGAAGACCAAAGTCAAGTCTTCACTTGTCCCTCCGCTACCTTCGTCGGCGTCTTCGACGGCCACGGCGGCCCTGAGGCCTCTCGCTTCCTCAACAGTCACCTCTTCCCCCGTCTACATAGACTCGCTTCGGAGCAAGGCGGATTGTCTACGGATATAATTAAGAAGGCATTCGATGACACTGAAGAGCAATTCTTGCATTTGGTGAAGCGATCTTGGCCTGCTCGACCGCAGATTGCTTTGGTCGGATCGTGTTGTCTTGTTGGAGTAATTTCTAATGATGTGTTGTATGTGGCCAATCTTGGGGACTCGAGGGCGGTTCTTGGCCGGAGAGTCTCCAGGGGGGGGAAGAACATGATAGTGGCAGAACGATTATCCACTGATCATAATGTTGGAGATGAAGAGGTGAGGAAGGAGGTTGAAGCACTCCATCCAGATGATGCGCATATAGTTGTAAATAATCGTGGAGTTTGGCGGATTAAGGGTATAATTCAGGTGTCCAGATCTATTGGAGACATATATTTGAAGAAACCTGAGTTTAACAGAGATCCCCTCTTCCAGCAGTTTGGATATCCCATTCCACTGAAACGACCTGTAATGACTGCAGAACCCTCAATTCAAGTGAGGAAGTTGATATCAGAGGACTTATTTTTGATATTTGCATCAGATGGCCTTTGGGAGCAATTGAGCGATGAAGCAGTTGTGGATATCGTCCACAAAAACCCAAGAGCTGGAATAGCCAAGCGATTGGTCACAGCTGCTCTTCAGGAGGCAGCAAAGAAAAACGAAATTAAATACGATGAACTGAAAAAGACAAGTAAAGGGTTGAGGCGTCACTTCCATGATGACATCACTGTTGTTGTGATGTATCTAGATCACCTCCACGGATCAGCTGGTGGTAGCAGATTCAAGGAAGGCTCTGTTGACTGCATCAGTGCTCCGGTTGATATCTACTCTCTCAATGTGGATGAAGCAGAAGACCCACTTTATATGGATTCCTGA 1137 0.4758 MLRKCWRQVERVLGRGGGDELLWHMDLKPHPCGDLSIAVVQANSSLEDQSQVFTCPSATFVGVFDGHGGPEASRFLNSHLFPRLHRLASEQGGLSTDIIKKAFDDTEEQFLHLVKRSWPARPQIALVGSCCLVGVISNDVLYVANLGDSRAVLGRRVSRGGKNMIVAERLSTDHNVGDEEVRKEVEALHPDDAHIVVNNRGVWRIKGIIQVSRSIGDIYLKKPEFNRDPLFQQFGYPIPLKRPVMTAEPSIQVRKLISEDLFLIFASDGLWEQLSDEAVVDIVHKNPRAGIAKRLVTAALQEAAKKNEIKYDELKKTSKGLRRHFHDDITVVVMYLDHLHGSAGGSRFKEGSVDCISAPVDIYSLNVDEAEDPLYMDS* 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0750 378 PANTHER PROTEIN PHOSPHATASE 32 334 IPR015655 GO:0004722|GO:0006470
Vvi18g0750 378 CDD PP2Cc 41 336 IPR001932 -
Vvi18g0750 378 ProSitePatterns PPM-type phosphatase domain signature. 60 68 IPR000222 GO:0043169
Vvi18g0750 378 Gene3D - 25 340 IPR036457 -
Vvi18g0750 378 ProSiteProfiles PPM-type phosphatase domain profile. 34 336 IPR001932 -
Vvi18g0750 378 FunFam Probable protein phosphatase 2C 42 25 344 - -
Vvi18g0750 378 Coils Coil 297 317 - -
Vvi18g0750 378 SMART PP2C_4 28 334 IPR001932 -
Vvi18g0750 378 Pfam Protein phosphatase 2C 57 307 IPR001932 -
Vvi18g0750 378 SUPERFAMILY PP2C-like 41 338 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0750 Vvi-Chr18 7874540 7878340 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0750 16 337 PP2C-type Phosphatase Gene Family AT3G51370 56.667 1.48e-138 398
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0750 - K01102 vvi:100854185 763.837