Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0737 ATGAGTTGCAACGGGTGCCGCGTTCTTCGAAAGGGATGCAGCGACTCATGCATTCTGAGGACGTGCCTCCAATGGATCGAGAACCCTGAGGCTCAAGGCTACGCCACCTTGTTCGTCTCTAAGTTCTTCGGCCGCAGCGATCTCATGTCCTTCATTTCTGCGGTGCCCGAGAACAAGAGGCCTGCTCTGTTTCAGTCTCTTTTGTTCGAAGCCTGTGGGCGCACTGTGAATCCAGTGAACGGCGCCGTCGGTCTTCTCTGGACTGGTAATTGGCACGTGTGCCAGGCAGCGGTGGACACAGTTCTCGCCGGAGGCACCTTGCGGCCGATTCCCGGAATTCTGGCCGGACCGATCAAACCAGGTTTCGATGAAGCTTCTGCGACGTTCTGTACCGACGCGTGGAAGCTACGTGACGCATACTCGCTGTCGAAACCGTTCATGCGTGACAATGCCTCTGAGGAAGCCAAAAGAATTGAGACTCAACCGCCTCACCTCGGAATCTCCGCGACGGCGCGCTTCTCGAACAAGATCAACGCCGGGAGAGGGAAGAGGTCGGGTACATCGTTTTGTTCGGAAGGATCATCGGGAACGATGAGCTACGATGGAAGTGACGATGATCGTAACATGTCTGGATGCCAAGAGCGGAAGCTTCTCAACCTTTTTATCTGA 669 0.5531 MSCNGCRVLRKGCSDSCILRTCLQWIENPEAQGYATLFVSKFFGRSDLMSFISAVPENKRPALFQSLLFEACGRTVNPVNGAVGLLWTGNWHVCQAAVDTVLAGGTLRPIPGILAGPIKPGFDEASATFCTDAWKLRDAYSLSKPFMRDNASEEAKRIETQPPHLGISATARFSNKINAGRGKRSGTSFCSEGSSGTMSYDGSDDDRNMSGCQERKLLNLFI* 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0737 222 Pfam Lateral organ boundaries (LOB) domain 2 101 IPR004883 -
Vvi18g0737 222 MobiDBLite consensus disorder prediction 180 207 - -
Vvi18g0737 222 ProSiteProfiles LOB domain profile. 1 107 IPR004883 -
Vvi18g0737 222 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 135 - -
Vvi18g0737 222 MobiDBLite consensus disorder prediction 180 206 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0737 Vvi-Chr18 7746357 7747144 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0737 1 139 AS2 family AT3G49940 72.917 1.92e-70 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vvi18g0737 LOB 9.8e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0737 - - vvi:100255841 460.685