Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0735 ATGGCTCTCGAAGCTCTCAACTCACCAACCACACCCACGCCTTCCTTTCACTACGAACAACCCAGCCTCCACTCTCTGGAGTCATGGGCCAAGCGCAAGCGTTCCAAGCGTCCTCGCTTCGACAACCAACCTACAGAGGAAGAGTATCTGGCTCTCTGCCTCATCATGTTGGCTCGAGGAGGCGCCGCCGCCTCCACCGTCTCACACCGCCGCCATCTCTCTCCCCCTCCTGCCCTGCAGGTGGAAGCTCCTAAACTCACATACAAATGTTCAGTTTGTAACAAGGCCTTCGCATCCTACCAGGCACTAGGGGGACACAAGGCCAGCCACCGTAAGCAGTCCGGATCCGATGACCTGTCGGCCTCCATCACCACCACAAGCACCGCGGCCGCTGCCAGCGGTGGTAGGACTCATGAGTGTTCCATCTGTCACAAGACTTTCCCCACTGGACAGGCTTTGGGTGGACACAAGCGATGCCACTACGAAGGCGGCGCCAGCGTCAGCAGTGGCGTTACCTCGTCCGAAGGTGTGGGGTCAACCCACAGCCACCGTGACTTCGACCTCAACCTGCCGGCTTTTCCCGAATTATGGTCCGCACGTCGATTCCCAGTCGATGACGAGGTCGAGAGTCCTCTGCCGACAAAGAAGCCCCGTCTCCAGATGCTGCCGCCAAAAACCGAAGTCTCTCTAGATCACCATTAG 702 0.5855 MALEALNSPTTPTPSFHYEQPSLHSLESWAKRKRSKRPRFDNQPTEEEYLALCLIMLARGGAAASTVSHRRHLSPPPALQVEAPKLTYKCSVCNKAFASYQALGGHKASHRKQSGSDDLSASITTTSTAAAASGGRTHECSICHKTFPTGQALGGHKRCHYEGGASVSSGVTSSEGVGSTHSHRDFDLNLPAFPELWSARRFPVDDEVESPLPTKKPRLQMLPPKTEVSLDHH* 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0735 233 MobiDBLite consensus disorder prediction 1 21 - -
Vvi18g0735 233 ProSiteProfiles Zinc finger C2H2 type domain profile. 88 115 IPR013087 -
Vvi18g0735 233 SMART c2h2final6 88 110 IPR013087 -
Vvi18g0735 233 SMART c2h2final6 138 160 IPR013087 -
Vvi18g0735 233 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 33 192 IPR044653 GO:0003700
Vvi18g0735 233 Pfam C2H2-type zinc finger 138 161 - -
Vvi18g0735 233 Pfam C2H2-type zinc finger 88 113 - -
Vvi18g0735 233 SUPERFAMILY beta-beta-alpha zinc fingers 87 160 IPR036236 -
Vvi18g0735 233 ProSitePatterns Zinc finger C2H2 type domain signature. 90 110 IPR013087 -
Vvi18g0735 233 ProSitePatterns Zinc finger C2H2 type domain signature. 140 160 IPR013087 -
Vvi18g0735 233 ProSiteProfiles Zinc finger C2H2 type domain profile. 138 160 IPR013087 -
Vvi18g0735 233 Gene3D Classic Zinc Finger 86 160 - -
Vvi18g0735 233 MobiDBLite consensus disorder prediction 165 185 - -
Vvi18g0735 233 MobiDBLite consensus disorder prediction 206 233 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0735 Vvi-Chr18 7732710 7733411 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0735 1 221 C2H2 Transcription Factor Family AT1G27730 51.055 3.41e-66 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vvi18g0735 zf-C2H2_6 2.2e-12 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0735 - - vvi:100250659 450.284