Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0733 ATGGATATTTGTATGGCCGATGAGAAAGATACTAGCTCATTTGTCCCGGTGTTTCCCGATTCTGCATCCGAAGAAACTGTTTTAGTGGGAGAAAATATCAGCAATGGGAAATTGGGAAATTTAGATGATGGTCAGATAGCAGGCATTGCCGTCCCTGAAAATGAATTGCAGCTCAAAAGGAAGTCAGATGTGCCAGAACGGCTCAGGGGAGGAGAAGAGAAAATCAACTCCGACTTGTCTGAGACAGCAAAGAAGAAACCTCGGGTTTCAAGAGATGTATGCGGAAGTAAGAAGAATGTAAAATCAAGAAGGGGTCTGAAACCCACTCCAAATGGTAACAATGAAGAAGACACCAATGCTGTAAGTGAAGGACAGAGCTCCAGCAGTATCAGCTCAGAGGATGATTCTAATGCTTCTCAGGAGCTAAATGGGGGGACAACTTCGGAGTCTAAAGGCTCTGCAGCTCTCAACTCGAATGGAAAGACGAGAGCCAGTAGGGGGTCAGCCACAGATCCCCAAAGCCTCTATGCAAGGAAAAGAAGGGAGAGAATAAATGAGCGATTGAGAATCTTACAGAACCTTGTTCCTAATGGAACAAAGGTTGACATAAGCACAATGCTTGAAGAGGCAGTCCATTATGTGAAGTTTTTGCAGCTCCAAATCAAGCTATTGAGCTCAGATGACATGTGGATGTACGCTCCCATTGCTTACAACGGAATGGACATTGGTCTCCAGAACCTCCACCAGAAGATCCCTTCACTCCGGTGA 768 0.4531 MDICMADEKDTSSFVPVFPDSASEETVLVGENISNGKLGNLDDGQIAGIAVPENELQLKRKSDVPERLRGGEEKINSDLSETAKKKPRVSRDVCGSKKNVKSRRGLKPTPNGNNEEDTNAVSEGQSSSSISSEDDSNASQELNGGTTSESKGSAALNSNGKTRASRGSATDPQSLYARKRRERINERLRILQNLVPNGTKVDISTMLEEAVHYVKFLQLQIKLLSSDDMWMYAPIAYNGMDIGLQNLHQKIPSLR* 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0733 255 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 168 217 IPR011598 GO:0046983
Vvi18g0733 255 MobiDBLite consensus disorder prediction 106 172 - -
Vvi18g0733 255 Pfam Helix-loop-helix DNA-binding domain 178 218 IPR011598 GO:0046983
Vvi18g0733 255 CDD bHLH_AtIND_like 169 231 - -
Vvi18g0733 255 MobiDBLite consensus disorder prediction 58 180 - -
Vvi18g0733 255 FunFam Basic helix-loop-helix transcription factor 169 226 - -
Vvi18g0733 255 Gene3D - 170 226 IPR036638 GO:0046983
Vvi18g0733 255 SMART finulus 174 223 IPR011598 GO:0046983
Vvi18g0733 255 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 168 234 IPR036638 GO:0046983
Vvi18g0733 255 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 83 244 - -
Vvi18g0733 255 MobiDBLite consensus disorder prediction 58 99 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0733 Vvi-Chr18 7711468 7712617 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0733 121 244 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G33880 77.165 9.42e-63 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vvi18g0733 HLH 1.1e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0733 - - vvi:100264335 485.337