Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0728 ATGGAGAGGGATTCTTACTCTAGCCTTCTCTGTTTGGATGAGGATGTAGTGGATGAAGAAGCCTTCATTAGCTTCAAAAACTGCACACCTTCGGATACTGAAGATGATGAGTACGTACAACTGTTGGTTGATAGAGAGATGAGTTTTGGGATTAAAACAAACCATTCATTCTTGATTTTGAACTGGGTTAAGCTTGCTCGTCTCGACGCAGTCGCATGGATTCTCAGAACAAGAGCGGTGTTTGGATTCCGCTTCCAAACGGCCTATCTGTGTGTGGCTTATCTGGATCGGTTTCTTTCGCGGCGAGCCATTGATAGCGACAAAACATGGGCGATTCGATTGCTGTCAGTGGCGTGTCTTTCTTTGGCGGCGAAGATGGAGGAATGCAGAGCTCCGGCGCTATCGGAATTCGCTGTTGAAGAATACAATTTTGAGAGCAAGGTGATTCAGAGAATGGAGCTCTTGGTATTGAATACATTGGAATGGAGGATGGGTTCAATTACTCCTTTTGCTTTTATTCATTACTTCATCACAAAATTTTGCAATCAATCTCCACCACCAAATGTGGTATCAAGGACTGTACAACTCACCATGGCTATAATGAGAGAGATAAATCTAATGGATCATCGACCATCTGTTATTGCCGCTGCAGCAGTATTGGTGGCATTGGATCAGAGATTAACAAGAAATGAATTGGAGTCTAAGATGAATGCCATCTCTTCATGTGGATCTCTTCAACCTGAGGATGTGTTTTCATGCTATAGTGTAGTGCAGGGGCTTGACAAGGAGAAGTGTGCACTTTCACTAAACCCGTCCACTACCCAATTGAGGCCAGCCGTTGATGTGCATGAAAATTCTTCAGTTACTTCTGCCGCTAGCACCAAAAGAAAAAGGCTTACCTTCTATGATTGTGATCCAAATTATGGAATACCCAATGAGAAGCGACCTCGCTAG 954 0.4371 MERDSYSSLLCLDEDVVDEEAFISFKNCTPSDTEDDEYVQLLVDREMSFGIKTNHSFLILNWVKLARLDAVAWILRTRAVFGFRFQTAYLCVAYLDRFLSRRAIDSDKTWAIRLLSVACLSLAAKMEECRAPALSEFAVEEYNFESKVIQRMELLVLNTLEWRMGSITPFAFIHYFITKFCNQSPPPNVVSRTVQLTMAIMREINLMDHRPSVIAAAAVLVALDQRLTRNELESKMNAISSCGSLQPEDVFSCYSVVQGLDKEKCALSLNPSTTQLRPAVDVHENSSVTSAASTKRKRLTFYDCDPNYGIPNEKRPR* 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0728 317 FunFam Cyclin-D5-1 62 165 - -
Vvi18g0728 317 SMART cyclin_7 72 158 IPR013763 -
Vvi18g0728 317 Pfam Cyclin, C-terminal domain 167 261 IPR004367 -
Vvi18g0728 317 CDD CYCLIN_AtCycD-like_rpt1 66 162 - -
Vvi18g0728 317 Gene3D - 166 254 - -
Vvi18g0728 317 SUPERFAMILY Cyclin-like 27 164 IPR036915 -
Vvi18g0728 317 CDD CYCLIN_AtCycD-like_rpt2 167 254 - -
Vvi18g0728 317 SMART Cyclin_C_2 167 292 IPR004367 -
Vvi18g0728 317 Gene3D - 66 165 - -
Vvi18g0728 317 FunFam Cyclin-D5-1 166 254 - -
Vvi18g0728 317 ProSitePatterns Cyclins signature. 67 98 IPR006671 -
Vvi18g0728 317 SUPERFAMILY Cyclin-like 150 257 IPR036915 -
Vvi18g0728 317 Pfam Cyclin, N-terminal domain 66 164 IPR006671 -
Vvi18g0728 317 PANTHER CYCLINS 33 258 IPR039361 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0728 Vvi-Chr18 7627161 7628513 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0728 67 240 Core Cell Cycle Gene Families AT4G37630 43.784 4.89e-43 147
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0728 K18811 - vvi:100248932 629.787