Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vvi18g0727 | ATGGAGAGCTATCTCAACGACAACTTTGGGGGTGTGAAGCCCAAGAACTCTTCCGAGGAGGCCCTCCAGAGATGGAGGAAGCTTTGCTGGGTTGTTAAAAACCCTAAGCGAAGGTTCCGTTTCACTGCTAATCTCAGCAAGCGATTCGAAGCTCAAGCTATTCGACGCTCCAATCAGGAGAAGTTTAGAGTAGCAGTTCTAGTTTCACAGGCTGCGCTTCAGTTTATTCATGGTTTGTCCAGTGACTACGTTGCACCTGAGGAAGTAACAGCTGCAGGTTTTCAAATTTGTGCTGATGAGTTGGGATCAATTGTGGAAGGCCATGACTTAAAAAAGCTGAAAATTCATGGTGGGGTTCAGGGTATTGCAGAGAAGCTCTCCACATCAACCACCAATGGTATTCCTATGGCTGATGATCTGTTGAATAAAAGAAAGGAAATTTATGGAATTAATAAATTCACTGAAACCAAAGTCCCTGGTTTCTGGGTTTTTGTGTGGGAAGCCCTTCATGATATGACCCTTATGATACTTGCTGTTTGTGCCTTTGTGTCTCTTCTTGTTGGCATAATAATGGAAGGATGGCCAAAGGGTGCACATGATGGACTTGGAATCGTTGCAAGTATTCTGCTTGTTGTATTTGTCACTGCTATAAGTGATTATAGACAATCTTTGCAGTTCAAGGATTTGGACACAGAGAAGAAAAAGATTACAGTTCAGGTTACTAGAGATGGGCAGAGGCAAAAGATATCAATATATGATCTAGTTCCAGGTGATATTGTTCATCTTTCCATTGGAGATCAGGTCCCAGCTGATGGACTTTTTGTTTTAGGATTTTCTTTGTTGATAAATGAGTCCAGTTTGACAGGAGAGAGTGAGCCAGTTCATGTGAATTCCGAGAATCCTTTTCTCTTGTCTGGAACTAAAGTTCAGGATGGGTCATGCAAAATGCTTGTGACTACTGTTGGGATGAGAACCCAATGGGGTAAATTGATGGCAACTCTTAGTGAAGGAGGGGATGATGAGACCCCATTGCAGGTAAAACTGAATGGAGTGGCAACCATCATTGGAAAACTCGGCCTGTTTTTTGCTGCTGTGACTTTTGCTGTTCTGGTGCAAGGATTGTTCAGCCGCAAACTCCGAGAGGGGTCCCACTGGAGCTGGTCTGGAGATGATGCACTGGAAATGTTGGAATTCTTTGCTGTTGCTGTTACAATTGTTGTGGTCGCAGTTCCTGAGGGGTTGCCCTTGGCTGTGACATTGAGCCTTGCTTTTGCCATGAAGAAGATGATGCATGATAAGGCACTTGTCCGTCATCTGGCTGCCTGTGAGACCATGGGATCTGCCACAAGTATTTGCAGTGACAAGACAGGGACTCTAACTACTAACCACATGACTGTTGTGAAGGTATGCATTTGTGGAAAAATCAAGGAAGTGAGCAGCTCTGAGGAAACTTCTAGTTTCTGCTCTGGAATTCCTGATTTTGCTGTTAGAATTTTACTTCAATCAATATTTAACAACACTGGGGGAGAAATTGTCACCAACAAAGACAACAAAACTGAGATACTAGGAACACCCACTGAAGCTGCTCTTTTGGAATTCGGTTTGTTGCTTGGTGGGGATTTCCAAGCAGAACGGCAAGCATCAAAACTTGTGAAAGTTGAACCATTCAATTCTGCAAAGAAACGAATGGGAGTGGTTCTAGAGATTCCTGAAGGAGGTTTTCGGGCCCACTCTAAAGGTGCTTCTGAAATAGTTTTGGCTTCATGTGACAAAGTCATAGACTCGAATGGTGATGTTGTTCCTCTCAATGAAGCATCATTCAATCATCTGAAGGATACAATTGAAAGATTTGCTAGTGAAGCTCTTCGAACCCTATGTCTTGCTTATATGGAACTTGGAAGTGAGTTCTCTGCAGAGAGTCCTCTTCCCAGTAAAGGATATACTTGTATAGGAATTGTGGGTATCAAAGATCCAGTTCGCCCAGGTGTCAAGGAGTCTGTTGCAATTTGTAGATCAGCTGGTATTTCTGTCCGGATGGTTACTGGAGACAACATAAACACTGCAAAGGCAATTGCTAGAGAATGTGGCATTCTGACTGATGAAGGCATAGCAATTGAAGGTCCAGTATTTCGTGAGAAGAGTGAGGAGGAATTGCAAAAACTAATTCCAAAAATTCAGGTAATGGCTCGATCTTCACCATTGGATAAGCATATCCTTGTGAAACACTTGAGAACTGCATTGGAAGAAGTTGTTGCAGTGACTGGGGATGGTACAAATGATGCTCCTGCACTTCATGAAGCAGACATTGGGCTTGCAATGGGCATTGCTGGAACAGAGGTGGCAAAAGAGAGTGCTGATGTCATAATTATGGATGATAACTTCTCCACTATTGTGACTGTGGGCAAATGGGGACGCTCAATTTATATTAACATTCAGAAATTTGTTCAATTTCAGTTGACAGTCAATATCGTTGCCCTAATTGTAAACTTTTCTTCAGCATGTTTGACAGGAAATGCTCCCCTGACCGCGGTTCAGCTTCTGTGGGTCAACATGATTATGGATACACTGGGAGCACTTGCACTGGCTACTGAACCTCCTAATGATGAGTTAATGAAAAGATCTCCAGTGGGAAGGAAAGAAAATTTCATCAGTAATGTGATGTGGAGAAATATCATTGGGCAGTCTCTCTATCAATTTGTCATAATATGGTTTCTTCAAACAAGAGGGAAAGCATTTTTCCATCTTGATGGCCCGGATTCTGATTTGATTCTAAACACAATTATTTTCAACTCCTTCGTCTTTTGTCAGGTTTTCAATGAGATCAACTCCAGGGAGTTGGAGAAGATAAATGTCTTCAAGGGCATGCTAAGGAACCATGTGTTTGTAGCTGTAGTCACATGCACTGTCGTATTTCAAATCATAATCGTCCAGTTCCTTGGTACCTTTGCAAACACATCCCCTCTTACTATGCAGCAGTGGATTGGTAGCATTCTCCTTGGATTCCTGTGCATGCCAATTGCAGCTGCCTTAAAAATGATTCCTGTGGATGGAAAATGA | 3057 | 0.4262 | MESYLNDNFGGVKPKNSSEEALQRWRKLCWVVKNPKRRFRFTANLSKRFEAQAIRRSNQEKFRVAVLVSQAALQFIHGLSSDYVAPEEVTAAGFQICADELGSIVEGHDLKKLKIHGGVQGIAEKLSTSTTNGIPMADDLLNKRKEIYGINKFTETKVPGFWVFVWEALHDMTLMILAVCAFVSLLVGIIMEGWPKGAHDGLGIVASILLVVFVTAISDYRQSLQFKDLDTEKKKITVQVTRDGQRQKISIYDLVPGDIVHLSIGDQVPADGLFVLGFSLLINESSLTGESEPVHVNSENPFLLSGTKVQDGSCKMLVTTVGMRTQWGKLMATLSEGGDDETPLQVKLNGVATIIGKLGLFFAAVTFAVLVQGLFSRKLREGSHWSWSGDDALEMLEFFAVAVTIVVVAVPEGLPLAVTLSLAFAMKKMMHDKALVRHLAACETMGSATSICSDKTGTLTTNHMTVVKVCICGKIKEVSSSEETSSFCSGIPDFAVRILLQSIFNNTGGEIVTNKDNKTEILGTPTEAALLEFGLLLGGDFQAERQASKLVKVEPFNSAKKRMGVVLEIPEGGFRAHSKGASEIVLASCDKVIDSNGDVVPLNEASFNHLKDTIERFASEALRTLCLAYMELGSEFSAESPLPSKGYTCIGIVGIKDPVRPGVKESVAICRSAGISVRMVTGDNINTAKAIARECGILTDEGIAIEGPVFREKSEEELQKLIPKIQVMARSSPLDKHILVKHLRTALEEVVAVTGDGTNDAPALHEADIGLAMGIAGTEVAKESADVIIMDDNFSTIVTVGKWGRSIYINIQKFVQFQLTVNIVALIVNFSSACLTGNAPLTAVQLLWVNMIMDTLGALALATEPPNDELMKRSPVGRKENFISNVMWRNIIGQSLYQFVIIWFLQTRGKAFFHLDGPDSDLILNTIIFNSFVFCQVFNEINSRELEKINVFKGMLRNHVFVAVVTCTVVFQIIIVQFLGTFANTSPLTMQQWIGSILLGFLCMPIAAALKMIPVDGK* | 1019 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vvi18g0727 | 1018 | CDD | P-type_ATPase_Ca_PMCA-like | 141 | 887 | - | - | |
| Vvi18g0727 | 1018 | NCBIfam | calcium-translocating P-type ATPase, PMCA-type | 111 | 1015 | IPR006408 | GO:0005388|GO:0005524|GO:0016020|GO:0070588 | |
| Vvi18g0727 | 1018 | NCBIfam | HAD-IC family P-type ATPase | 724 | 835 | IPR001757 | GO:0005215|GO:0005524|GO:0016020|GO:0016887 | |
| Vvi18g0727 | 1018 | NCBIfam | HAD-IC family P-type ATPase | 204 | 375 | IPR001757 | GO:0005215|GO:0005524|GO:0016020|GO:0016887 | |
| Vvi18g0727 | 1018 | NCBIfam | HAD-IC family P-type ATPase | 392 | 479 | IPR001757 | GO:0005215|GO:0005524|GO:0016020|GO:0016887 | |
| Vvi18g0727 | 1018 | NCBIfam | HAD-IC family P-type ATPase | 545 | 699 | IPR001757 | GO:0005215|GO:0005524|GO:0016020|GO:0016887 | |
| Vvi18g0727 | 1018 | FunFam | Calcium-transporting ATPase | 647 | 799 | - | - | |
| Vvi18g0727 | 1018 | SUPERFAMILY | HAD-like | 451 | 859 | IPR036412 | - | |
| Vvi18g0727 | 1018 | SFLD | p-type atpase | 434 | 806 | IPR044492 | - | |
| Vvi18g0727 | 1018 | Gene3D | - | 17 | 77 | - | - | |
| Vvi18g0727 | 1018 | FunFam | Calcium-transporting ATPase | 462 | 658 | - | - | |
| Vvi18g0727 | 1018 | Pfam | Ca2+-ATPase N terminal autoinhibitory domain | 5 | 49 | IPR024750 | GO:0005516 | |
| Vvi18g0727 | 1018 | SUPERFAMILY | Metal cation-transporting ATPase, ATP-binding domain N | 458 | 663 | IPR023299 | GO:0000166 | |
| Vvi18g0727 | 1018 | PANTHER | CATION TRANSPORTING ATPASE | 81 | 1014 | - | - | |
| Vvi18g0727 | 1018 | SUPERFAMILY | Calcium ATPase, transduction domain A | 236 | 332 | IPR008250 | - | |
| Vvi18g0727 | 1018 | Pfam | Cation transporting ATPase, C-terminus | 839 | 1013 | IPR006068 | - | |
| Vvi18g0727 | 1018 | Pfam | haloacid dehalogenase-like hydrolase | 650 | 768 | - | - | |
| Vvi18g0727 | 1018 | SFLD | C1.7: P-type atpase like | 434 | 806 | - | - | |
| Vvi18g0727 | 1018 | PRINTS | H+-transporting ATPase (proton pump) signature | 610 | 628 | IPR001757 | GO:0005215|GO:0005524|GO:0016020|GO:0016887 | |
| Vvi18g0727 | 1018 | PRINTS | H+-transporting ATPase (proton pump) signature | 754 | 770 | IPR001757 | GO:0005215|GO:0005524|GO:0016020|GO:0016887 | |
| Vvi18g0727 | 1018 | PRINTS | H+-transporting ATPase (proton pump) signature | 786 | 811 | IPR001757 | GO:0005215|GO:0005524|GO:0016020|GO:0016887 | |
| Vvi18g0727 | 1018 | Pfam | Cation transporter/ATPase, N-terminus | 117 | 184 | IPR004014 | - | |
| Vvi18g0727 | 1018 | Pfam | Cation transport ATPase (P-type) | 513 | 592 | - | - | |
| Vvi18g0727 | 1018 | Gene3D | - | 141 | 335 | - | - | |
| Vvi18g0727 | 1018 | Pfam | E1-E2 ATPase | 235 | 430 | - | - | |
| Vvi18g0727 | 1018 | FunFam | Calcium-transporting ATPase | 17 | 77 | - | - | |
| Vvi18g0727 | 1018 | FunFam | Calcium-transporting ATPase | 214 | 335 | - | - | |
| Vvi18g0727 | 1018 | Gene3D | - | 462 | 658 | IPR023299 | GO:0000166 | |
| Vvi18g0727 | 1018 | PRINTS | P-type cation-transporting ATPase superfamily signature | 283 | 297 | - | - | |
| Vvi18g0727 | 1018 | PRINTS | P-type cation-transporting ATPase superfamily signature | 754 | 773 | - | - | |
| Vvi18g0727 | 1018 | PRINTS | P-type cation-transporting ATPase superfamily signature | 778 | 790 | - | - | |
| Vvi18g0727 | 1018 | PRINTS | P-type cation-transporting ATPase superfamily signature | 452 | 466 | - | - | |
| Vvi18g0727 | 1018 | PRINTS | P-type cation-transporting ATPase superfamily signature | 651 | 662 | - | - | |
| Vvi18g0727 | 1018 | PRINTS | P-type cation-transporting ATPase superfamily signature | 673 | 683 | - | - | |
| Vvi18g0727 | 1018 | SUPERFAMILY | Calcium ATPase, transmembrane domain M | 117 | 1014 | IPR023298 | - | |
| Vvi18g0727 | 1018 | ProSitePatterns | E1-E2 ATPases phosphorylation site. | 454 | 460 | IPR018303 | - | |
| Vvi18g0727 | 1018 | Gene3D | - | 167 | 1013 | - | - | |
| Vvi18g0727 | 1018 | Gene3D | - | 449 | 799 | IPR023214 | - | |
| Vvi18g0727 | 1018 | FunFam | Calcium-transporting ATPase | 771 | 1017 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vvi18g0727 | Vvi-Chr18 | 7611549 | 7622657 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vvi18g0727 | 1 | 1015 | Primary Pumps ATPases | AT1G27770 | 81.514 | 0.0 | 1695 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vvi18g0727 | K01537 | - | vvi:100262693 | 1972.21 |